Publications - HDX Workbench

Publications are stories, and HDX Workbench is hands down the most cited analysis software in the field, including nineteen Nature publications. Below is a list of publications that cite our software or its derivative work, so look at all of the scientific stories below and see what you can do with HDX Workbench!

de Vera, I. M. S., Munoz-Tello, P., Zheng, J., Dharmarajan, V., Marciano, D. P., Matta-Camacho, E., Giri, P. K., Shang, J., Hughes, T. S., Rance, M., & others. (2019). Defining a canonical ligand-binding pocket in the orphan nuclear receptor nurr1. Structure, 27(1), 66–77.
[Bibtex]

@article{de2019defining,
title={Defining a canonical ligand-binding pocket in the orphan nuclear receptor Nurr1},
author={de Vera, Ian Mitchelle S and Munoz-Tello, Paola and Zheng, Jie and Dharmarajan, Venkatasubramanian and Marciano, David P and Matta-Camacho, Edna and Giri, Pankaj Kumar and Shang, Jinsai and Hughes, Travis S and Rance, Mark and others},
journal={Structure},
volume={27},
number={1},
pages={66--77},
year={2019},
publisher={Elsevier}
}

Mosure, S., Shang, J., Eberhardt, J., Brust, R., Zheng, J., Griffin, P. R., Forli, S., & Kojetin, D. J.. (2019). Structural basis of altered potency and efficacy displayed by a major in vivo metabolite of the anti-diabetic ppar$\gamma$ drug pioglitazone. Journal of medicinal chemistry.
[Bibtex]

@article{mosure2019structural,
title={Structural basis of altered potency and efficacy displayed by a major in vivo metabolite of the anti-diabetic PPAR$\gamma$ drug pioglitazone},
author={Mosure, Sarah and Shang, Jinsai and Eberhardt, Jerome and Brust, Richard and Zheng, Jie and Griffin, Patrick R and Forli, Stefano and Kojetin, Douglas J},
journal={Journal of medicinal chemistry},
year={2019},
publisher={ACS Publications}
}

Na, S., Lee, J., Joo, J. W. J., Lee, K., & Paek, E.. (2019). Demix: decoding deuterated distributions from heterogeneous protein states via hdx-ms. Scientific reports, 9(1), 3176.
[Bibtex]

@article{na2019demix,
title={deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS},
author={Na, Seungjin and Lee, Jae-Jin and Joo, Jong Wha J and Lee, Kong-Joo and Paek, Eunok},
journal={Scientific reports},
volume={9},
number={1},
pages={3176},
year={2019},
publisher={Nature Publishing Group}
}

Salinas, N. D., Paing, M. M., Adhikari, J., Gross, M. L., & Tolia, N.. (2019). Moderately-neutralizing epitopes in non-functional regions dominate the antibody response to plasmodium falciparum eba-140. Infection and immunity, IAI–00716.
[Bibtex]

@article{salinas2019moderately,
title={Moderately-neutralizing epitopes in non-functional regions dominate the antibody response to Plasmodium falciparum EBA-140},
author={Salinas, Nichole D and Paing, May M and Adhikari, Jagat and Gross, Michael L and Tolia, Niraj},
journal={Infection and immunity},
pages={IAI--00716},
year={2019},
publisher={Am Soc Microbiol}
}

Lafita, A., Bliven, S., Prlić, A., Guzenko, D., Rose, P. W., Bradley, A., Pavan, P., Myers-Turnbull, D., Valasatava, Y., Heuer, M., & others. (2019). Biojava 5: a community driven open-source bioinformatics library. Plos computational biology, 15(2), e1006791.
[Bibtex]

@article{lafita2019biojava,
title={BioJava 5: A community driven open-source bioinformatics library},
author={Lafita, Aleix and Bliven, Spencer and Prli{\'c}, Andreas and Guzenko, Dmytro and Rose, Peter W and Bradley, Anthony and Pavan, Paolo and Myers-Turnbull, Douglas and Valasatava, Yana and Heuer, Michael and others},
journal={PLoS computational biology},
volume={15},
number={2},
pages={e1006791},
year={2019},
publisher={Public Library of Science}
}

Deyaert, E., Leemans, M., Singh, R. K., Gallardo, R., Steyaert, J., Kortholt, A., Lauer, J., & Versées, W.. (2019). Structure and nucleotide-induced conformational dynamics of the chlorobium tepidum roco protein. Biochemical journal, 476(1), 51–66.
[Bibtex]

@article{deyaert2019structure,
title={Structure and nucleotide-induced conformational dynamics of the Chlorobium tepidum Roco protein},
author={Deyaert, Egon and Leemans, Margaux and Singh, Ranjan Kumar and Gallardo, Rodrigo and Steyaert, Jan and Kortholt, Arjan and Lauer, Janelle and Vers{\'e}es, Wim},
journal={Biochemical Journal},
volume={476},
number={1},
pages={51--66},
year={2019},
publisher={Portland Press Limited}
}

Yan, Y., Zhou, E. X., Novick, S. J., Shaw, S. J., Li, Y., Brunzelle, J. S., Hitoshi, Y., Griffin, P. R., Xu, E. H., & Melcher, K.. (2019). Structures of amp-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states. Journal of biological chemistry, 294(3), 953–967.
[Bibtex]

@article{yan2019structures,
title={Structures of AMP-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states},
author={Yan, Yan and Zhou, X Edward and Novick, Scott J and Shaw, Simon J and Li, Yingwu and Brunzelle, Joseph S and Hitoshi, Yasumichi and Griffin, Patrick R and Xu, H Eric and Melcher, Karsten},
journal={Journal of Biological Chemistry},
volume={294},
number={3},
pages={953--967},
year={2019},
publisher={ASBMB}
}

Zhang, C., Konermann, S., Brideau, N. J., Lotfy, P., Wu, X., Novick, S. J., Strutzenberg, T., Griffin, P. R., Hsu, P. D., & Lyumkis, D.. (2018). Structural basis for the rna-guided ribonuclease activity of crispr-cas13d. Cell, 175(1), 212–223.
[Bibtex]

@article{zhang2018structural,
title={Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d},
author={Zhang, Cheng and Konermann, Silvana and Brideau, Nicholas J and Lotfy, Peter and Wu, Xuebing and Novick, Scott J and Strutzenberg, Timothy and Griffin, Patrick R and Hsu, Patrick D and Lyumkis, Dmitry},
journal={Cell},
volume={175},
number={1},
pages={212--223},
year={2018},
publisher={Elsevier}
}

Lau, A. M., Ahdash, Z., Martens, C., & Politis, A.. (2018). Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry. Biorxiv, 417998.
[Bibtex]

@article{lau2018deuteros,
title={Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry},
author={Lau, Andy MC and Ahdash, Zainab and Martens, Chloe and Politis, Argyris},
journal={bioRxiv},
pages={417998},
year={2018},
publisher={Cold Spring Harbor Laboratory}
}

Fassler, R., Edinger, N., Rimon, O., & Reichmann, D.. (2018). Defining hsp33’s redox-regulated chaperone activity and mapping conformational changes on hsp33 using hydrogen-deuterium exchange mass spectrometry. Jove (journal of visualized experiments)(136), e57806.
[Bibtex]

@article{fassler2018defining,
title={Defining Hsp33's Redox-regulated Chaperone Activity and Mapping Conformational Changes on Hsp33 Using Hydrogen-deuterium Exchange Mass Spectrometry},
author={Fassler, Rosi and Edinger, Nufar and Rimon, Oded and Reichmann, Dana},
journal={JoVE (Journal of Visualized Experiments)},
number={136},
pages={e57806},
year={2018}
}

Frkic, R. L., Chua, B. S., Shin, Y., Pascal, B. D., Novick, S. J., Kamenecka, T. M., Griffin, P. R., & Bruning, J. B.. (2018). Structural and dynamic elucidation of a non-acid ppar𝛾 partial agonist: sr1988. .
[Bibtex]

@article{frkic2018structural,
title={Structural and Dynamic Elucidation of a Non-acid PPAR𝛾 Partial Agonist: SR1988},
author={Frkic, Rebecca L and Chua, Benjamin S and Shin, Youseung and Pascal, Bruce D and Novick, Scott J and Kamenecka, Theodore M and Griffin, Patrick R and Bruning, John B},
year={2018}
}

Patil, D. N., Rangarajan, E. S., Novick, S. J., Pascal, B. D., Kojetin, D. J., Griffin, P. R., Izard, T., & Martemyanov, K. A.. (2018). Structural organization of a major neuronal g protein regulator, the rgs7-g$\beta$5-r7bp complex. Elife, 7, e42150.
[Bibtex]

@article{patil2018structural,
title={Structural organization of a major neuronal G protein regulator, the RGS7-G$\beta$5-R7BP complex},
author={Patil, Dipak N and Rangarajan, Erumbi S and Novick, Scott J and Pascal, Bruce D and Kojetin, Douglas J and Griffin, Patrick R and Izard, Tina and Martemyanov, Kirill A},
journal={eLife},
volume={7},
pages={e42150},
year={2018},
publisher={eLife Sciences Publications Limited}
}

Sanulli, S., Trnka, M. J., Dharmarajan, V., Tibble, R. W., Pascal, B. D., Burlingame, A. L., Griffin, P. R., Gross, J. D., & Narlikar, G. J.. (2018). Disorganization of the histone core promotes organization of heterochromatin into phase-separated droplets. Biorxiv, 473132.
[Bibtex]

@article{sanulli2018disorganization,
title={Disorganization of the histone core promotes organization of heterochromatin into phase-separated droplets},
author={Sanulli, Serena and Trnka, Mike J and Dharmarajan, Venkat and Tibble, Ryan W and Pascal, Bruce D and Burlingame, Alma L and Griffin, Patrick R and Gross, John D and Narlikar, Geeta J},
journal={bioRxiv},
pages={473132},
year={2018},
publisher={Cold Spring Harbor Laboratory}
}

Robin, A. Y., Iyer, S., Birkinshaw, R. W., Sandow, J., Wardak, A., Luo, C. S., Shi, M., Webb, A. I., Czabotar, P. E., Kluck, R. M., & others. (2018). Ensemble properties of bax determine its function. Structure, 26(10), 1346–1359.
[Bibtex]

@article{robin2018ensemble,
title={Ensemble Properties of Bax Determine Its Function},
author={Robin, Adeline Y and Iyer, Sweta and Birkinshaw, Richard W and Sandow, Jarrod and Wardak, Ahmad and Luo, Cindy S and Shi, Melissa and Webb, Andrew I and Czabotar, Peter E and Kluck, Ruth M and others},
journal={Structure},
volume={26},
number={10},
pages={1346--1359},
year={2018},
publisher={Elsevier}
}

Háda, V., Bagdi, A., Bihari, Z., Timári, S. B., Fizil, Ádám., & Szántay Jr, C.. (2018). Recent advancements, challenges, and practical considerations in the mass spectrometry-based analytics of protein biotherapeutics: a viewpoint from the biosimilar industry. Journal of pharmaceutical and biomedical analysis.
[Bibtex]

@article{hada2018recent,
title={Recent advancements, challenges, and practical considerations in the mass spectrometry-based analytics of protein biotherapeutics: A viewpoint from the biosimilar industry},
author={H{\'a}da, Viktor and Bagdi, Attila and Bihari, Zsolt and Tim{\'a}ri, Sarolta Bagin{\'e} and Fizil, {\'A}d{\'a}m and Sz{\'a}ntay Jr, Csaba},
journal={Journal of pharmaceutical and biomedical analysis},
year={2018},
publisher={Elsevier}
}

Woodcock, J. M., Goodwin, K. L., Sandow, J. J., Coolen, C., Perugini, M. A., Webb, A. I., Pitson, S. M., Lopez, A. F., & Carver, J. A.. (2018). Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, n-terminal $\alpha$-helical order, and molecular chaperone activity. Journal of biological chemistry, 293(1), 89–99.
[Bibtex]

@article{woodcock2018role,
title={Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, N-terminal $\alpha$-helical order, and molecular chaperone activity},
author={Woodcock, Joanna M and Goodwin, Katy L and Sandow, Jarrod J and Coolen, Carl and Perugini, Matthew A and Webb, Andrew I and Pitson, Stuart M and Lopez, Angel F and Carver, John A},
journal={Journal of Biological Chemistry},
volume={293},
number={1},
pages={89--99},
year={2018},
publisher={ASBMB}
}

Kim, H., Wrann, C. D., Jedrychowski, M., Vidoni, S., Kitase, Y., Nagano, K., Zhou, C., Chou, J., Parkman, V. A., Novick, S. J., & others. (2018). Irisin mediates effects on bone and fat via $\alpha$v integrin receptors. Cell, 175(7), 1756–1768.
[Bibtex]

@article{kim2018irisin,
title={Irisin Mediates Effects on Bone and Fat via $\alpha$V Integrin Receptors},
author={Kim, Hyeonwoo and Wrann, Christiane D and Jedrychowski, Mark and Vidoni, Sara and Kitase, Yukiko and Nagano, Kenichi and Zhou, Chenhe and Chou, Joshua and Parkman, Virginia-Jeni A and Novick, Scott J and others},
journal={Cell},
volume={175},
number={7},
pages={1756--1768},
year={2018},
publisher={Elsevier}
}

Hung, P. J., Johnson, B., Chen, B., Byrum, A. K., Bredemeyer, A. L., Yewdell, W. T., Johnson, T. E., Lee, B. J., Deivasigamani, S., Hindi, I., & others. (2018). Mri is a dna damage response adaptor during classical non-homologous end joining. Molecular cell, 71(2), 332–342.
[Bibtex]

@article{hung2018mri,
title={MRI is a DNA damage response adaptor during classical non-homologous end joining},
author={Hung, Putzer J and Johnson, Britney and Chen, Bo-Ruei and Byrum, Andrea K and Bredemeyer, Andrea L and Yewdell, William T and Johnson, Tanya E and Lee, Brian J and Deivasigamani, Shruthi and Hindi, Issa and others},
journal={Molecular cell},
volume={71},
number={2},
pages={332--342},
year={2018},
publisher={Elsevier}
}

Zheng, J., Corzo, C., Chang, M. R., Shang, J., Lam, V. Q., Brust, R., Blayo, A., Bruning, J. B., Kamenecka, T. M., Kojetin, D. J., & others. (2018). Chemical crosslinking mass spectrometry reveals the conformational landscape of the activation helix of ppar$\gamma$; a model for ligand-dependent antagonism. Structure, 26(11), 1431–1439.
[Bibtex]

@article{zheng2018chemical,
title={Chemical crosslinking mass spectrometry reveals the conformational landscape of the activation helix of PPAR$\gamma$; a model for ligand-dependent antagonism},
author={Zheng, Jie and Corzo, Cesar and Chang, Mi Ra and Shang, Jinsai and Lam, Vinh Q and Brust, Richard and Blayo, Anne-Laure and Bruning, John B and Kamenecka, Theodore M and Kojetin, Douglas J and others},
journal={Structure},
volume={26},
number={11},
pages={1431--1439},
year={2018},
publisher={Elsevier}
}

Fernandez, E., Kose, N., Edeling, M. A., Adhikari, J., Sapparapu, G., Lazarte, S. M., Nelson, C. A., Govero, J., Gross, M. L., Fremont, D. H., & others. (2018). Mouse and human monoclonal antibodies protect against infection by multiple genotypes of japanese encephalitis virus. Mbio, 9(1), e00008–18.
[Bibtex]

@article{fernandez2018mouse,
title={Mouse and human monoclonal antibodies protect against infection by multiple genotypes of japanese encephalitis virus},
author={Fernandez, Estefania and Kose, Nurgun and Edeling, Melissa A and Adhikari, Jagat and Sapparapu, Gopal and Lazarte, Susana M and Nelson, Christopher A and Govero, Jennifer and Gross, Michael L and Fremont, Daved H and others},
journal={MBio},
volume={9},
number={1},
pages={e00008--18},
year={2018},
publisher={Am Soc Microbiol}
}

Bandyopadhyay, A., Van Eps, N., Eger, B. T., Rauscher, S., Yedidi, R. S., Moroni, T., West, G. M., Robinson, K. A., Griffin, P. R., Mitchell, J., & others. (2018). A novel polar core and weakly fixed c-tail in squid arrestin provide new insight into interaction with rhodopsin. Journal of molecular biology, 430(21), 4102–4118.
[Bibtex]

@article{bandyopadhyay2018novel,
title={A Novel Polar Core and Weakly Fixed C-Tail in Squid Arrestin Provide New Insight into Interaction with Rhodopsin},
author={Bandyopadhyay, Abhishek and Van Eps, Ned and Eger, Bryan T and Rauscher, Sarah and Yedidi, Ravikiran S and Moroni, Tina and West, Graham M and Robinson, Kelly Ann and Griffin, Patrick R and Mitchell, Jane and others},
journal={Journal of molecular biology},
volume={430},
number={21},
pages={4102--4118},
year={2018},
publisher={Elsevier}
}

Offenbacher, A. R., Iavarone, A. T., & Klinman, J. P.. (2018). Hydrogen–deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase. Journal of biological chemistry, 293(4), 1138–1148.
[Bibtex]

@article{offenbacher2018hydrogen,
title={Hydrogen--deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase},
author={Offenbacher, Adam R and Iavarone, Anthony T and Klinman, Judith P},
journal={Journal of Biological Chemistry},
volume={293},
number={4},
pages={1138--1148},
year={2018},
publisher={ASBMB}
}

@article{offenbacher2018hydrogen,
title={Hydrogen--deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase},
author={Offenbacher, Adam R and Iavarone, Anthony T and Klinman, Judith P},
journal={Journal of Biological Chemistry},
volume={293},
number={4},
pages={1138--1148},
year={2018},
publisher={ASBMB}
}

@article{fernandez2018mouse,
title={Mouse and Human Monoclonal Antibodies Protect against Infection by Multiple Genotypes of Japanese Encephalitis Virus},
author={Fernandez, Estefania and Kose, Nurgun and Edeling, Melissa A and Adhikari, Jagat and Sapparapu, Gopal and Lazarte, Susana M and Nelson, Christopher A and Govero, Jennifer and Gross, Michael L and Fremont, Daved H and others},
journal={mBio},
volume={9},
number={1},
pages={e00008--18},
year={2018},
publisher={Am Soc Microbiol}
}

@article{woodcock2018role,
title={Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, N-terminal $\alpha$-helical order, and molecular chaperone activity},
author={Woodcock, Joanna M and Goodwin, Katy L and Sandow, Jarrod J and Coolen, Carl and Perugini, Matthew A and Webb, Andrew I and Pitson, Stuart M and Lopez, Angel F and Carver, John A},
journal={Journal of Biological Chemistry},
volume={293},
number={1},
pages={89--99},
year={2018},
publisher={ASBMB}
}

Johnson, B., VanBlargan, L. A., Xu, W., White, J. P., Shan, C., Shi, P., Zhang, R., Adhikari, J., Gross, M. L., Leung, D. W., & others. (2018). Human ifit3 modulates ifit1 rna binding specificity and protein stability. Immunity, 48(3), 487–499.
[Bibtex]

@article{johnson2018human,
title={Human IFIT3 modulates IFIT1 RNA binding specificity and protein stability},
author={Johnson, Britney and VanBlargan, Laura A and Xu, Wei and White, James P and Shan, Chao and Shi, Pei-Yong and Zhang, Rong and Adhikari, Jagat and Gross, Michael L and Leung, Daisy W and others},
journal={Immunity},
volume={48},
number={3},
pages={487--499},
year={2018},
publisher={Elsevier}
}

Arun, A., Narayanan, S., Sarangi, S., & Mandal, A. K.. (2018). Analysis of isotopic peaks in hydrogen/deuterium exchange mass spectra for precise measurement of isotope average centroid mass of peptides and proteins using r programming language. .
[Bibtex]

@article{arun2018analysis,
title={Analysis of Isotopic Peaks in Hydrogen/Deuterium Exchange Mass Spectra for Precise Measurement of Isotope Average Centroid Mass of Peptides and Proteins Using R Programming Language},
author={Arun, Arumugaperumal and Narayanan, Sreekala and Sarangi, Subhasis and Mandal, Amit Kumar},
year={2018}
}

Zheng, J., Wang, C., Chang, M. R., Devarkar, S. C., Schweibenz, B., Crynen, G. C., Garcia-Ordonez, R. D., Pascal, B. D., Novick, S. J., Patel, S. S., & others. (2018). Hdx-ms reveals dysregulated checkpoints that compromise discrimination against self rna during rig-i mediated autoimmunity. Nature communications, 9(1), 5366.
[Bibtex]

@article{zheng2018hdx,
title={HDX-MS reveals dysregulated checkpoints that compromise discrimination against self RNA during RIG-I mediated autoimmunity},
author={Zheng, Jie and Wang, Chen and Chang, Mi Ra and Devarkar, Swapnil C and Schweibenz, Brandon and Crynen, Gogce C and Garcia-Ordonez, Ruben D and Pascal, Bruce D and Novick, Scott J and Patel, Smita S and others},
journal={Nature communications},
volume={9},
number={1},
pages={5366},
year={2018},
publisher={Nature Publishing Group}
}

Hamuro, Y., & Coales, S. J.. (2018). Optimization of feasibility stage for hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 1–7.
[Bibtex]

@article{hamuro2018optimization,
title={Optimization of Feasibility Stage for Hydrogen/Deuterium Exchange Mass Spectrometry},
author={Hamuro, Yoshitomo and Coales, Stephen J},
journal={Journal of The American Society for Mass Spectrometry},
pages={1--7},
year={2018},
publisher={Springer}
}

Chinthalapudi, K., Mandati, V., Zheng, J., Sharff, A. J., Bricogne, G., Griffin, P. R., Kissil, J., & Izard, T.. (2018). Lipid binding promotes the open conformation and tumor-suppressive activity of neurofibromin 2. Nature communications, 9(1), 1338.
[Bibtex]

@article{chinthalapudi2018lipid,
title={Lipid binding promotes the open conformation and tumor-suppressive activity of neurofibromin 2},
author={Chinthalapudi, Krishna and Mandati, Vinay and Zheng, Jie and Sharff, Andrew J and Bricogne, Gerard and Griffin, Patrick R and Kissil, Joseph and Izard, Tina},
journal={Nature communications},
volume={9},
number={1},
pages={1338},
year={2018},
publisher={Nature Publishing Group}
}

Petrie, E., Sandow, J., Jacobsen, A., Smith, B., Griffin, M., Lucet, I., Dai, W., Young, S., Tanzer, M., Wardak, A., & others. (2018). Conformational switching of the pseudokinase domain promotes human mlkl tetramerization and cell death by necroptosis.. Nature communications, 9(1), 2422–2422.
[Bibtex]

@article{petrie2018conformational,
title={Conformational switching of the pseudokinase domain promotes human MLKL tetramerization and cell death by necroptosis.},
author={Petrie, EJ and Sandow, JJ and Jacobsen, AV and Smith, BJ and Griffin, MDW and Lucet, IS and Dai, W and Young, SN and Tanzer, MC and Wardak, A and others},
journal={Nature communications},
volume={9},
number={1},
pages={2422--2422},
year={2018}
}

Johnson, B., McConnell, P., Kozlov, A. G., Mekel, M., Lohman, T. M., Gross, M. L., Amarasinghe, G. K., & Cooper, J. A.. (2018). Allosteric coupling of carmil and v-1 binding to capping protein revealed by hydrogen-deuterium exchange. Cell reports, 23(9), 2795–2804.
[Bibtex]

@article{johnson2018allosteric,
title={Allosteric Coupling of CARMIL and V-1 Binding to Capping Protein Revealed by Hydrogen-Deuterium Exchange},
author={Johnson, Britney and McConnell, Patrick and Kozlov, Alex G and Mekel, Marlene and Lohman, Timothy M and Gross, Michael L and Amarasinghe, Gaya K and Cooper, John A},
journal={Cell reports},
volume={23},
number={9},
pages={2795--2804},
year={2018},
publisher={Elsevier}
}

Xiao, K., Zhao, Y., Choi, M., Liu, H., Blanc, A., Qian, J., Cahill III, T. J., Li, X., Xiao, Y., Clark, L. J., & others. (2018). Revealing the architecture of protein complexes by an orthogonal approach combining hdxms, cxms, and disulfide trapping. Nature protocols, 13(6), 1403.
[Bibtex]

@article{xiao2018revealing,
title={Revealing the architecture of protein complexes by an orthogonal approach combining HDXMS, CXMS, and disulfide trapping},
author={Xiao, Kunhong and Zhao, Yang and Choi, Minjung and Liu, Hongda and Blanc, Adi and Qian, Jiang and Cahill III, Thomas J and Li, Xue and Xiao, Yunfang and Clark, Lisa J and others},
journal={Nature protocols},
volume={13},
number={6},
pages={1403},
year={2018},
publisher={Nature Publishing Group}
}

Birch, J., Axford, D., Foadi, J., Meyer, A., Eckardt, A., Thielmann, Y., & Moraes, I.. (2018). The fine art of integral membrane protein crystallisation. Methods.
[Bibtex]

@article{birch2018fine,
title={The fine art of integral membrane protein crystallisation},
author={Birch, James and Axford, Danny and Foadi, James and Meyer, Arne and Eckardt, Annette and Thielmann, Yvonne and Moraes, Isabel},
journal={Methods},
year={2018},
publisher={Elsevier}
}

Johnson, B., VanBlargan, L. A., Xu, W., White, J. P., Shan, C., Shi, P., Zhang, R., Adhikari, J., Gross, M. L., Leung, D. W., & others. (2018). Binding of ifit1 by ifit3 modulates protein stability and rna binding specificity. Immunity, 48(3), 487.
[Bibtex]

@article{johnson2018binding,
title={Binding of IFIT1 by IFIT3 modulates protein stability and RNA binding specificity},
author={Johnson, Britney and VanBlargan, Laura A and Xu, Wei and White, James P and Shan, Chao and Shi, Pei-Yong and Zhang, Rong and Adhikari, Jagat and Gross, Michael L and Leung, Daisy W and others},
journal={Immunity},
volume={48},
number={3},
pages={487},
year={2018},
publisher={NIH Public Access}
}

Oganesyan, I., Lento, C., & Wilson, D. J.. (2018). Contemporary hydrogen deuterium exchange mass spectrometry. Methods.
[Bibtex]

@article{oganesyan2018contemporary,
title={Contemporary Hydrogen Deuterium Exchange Mass Spectrometry},
author={Oganesyan, Irina and Lento, Cristina and Wilson, Derek J},
journal={Methods},
year={2018},
publisher={Elsevier}
}

Fanning, S. W., Jeselsohn, R., Dharmarajan, V., Mayne, C. G., Karimi, M., Buchwalter, G., Houtman, R., Toy, W., Fowler, C. E., Laine, M., & others. (2018). The serm/serd bazedoxifene disrupts esr1 helix 12 to overcome acquired hormone resistance in breast cancer cells. Biorxiv, 306472.
[Bibtex]

@article{fanning2018serm,
title={The SERM/SERD Bazedoxifene Disrupts ESR1 Helix 12 to Overcome Acquired Hormone Resistance in Breast Cancer Cells},
author={Fanning, Sean W and Jeselsohn, Rinath and Dharmarajan, Venkatasubramanian and Mayne, Christopher G and Karimi, Mostafa and Buchwalter, Gilles and Houtman, Ren{\'e} and Toy, Weiyi and Fowler, Colin E and Laine, Muriel and others},
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title={Dimerization controls Marburg virus VP24-dependent modulation of host antioxidative stress responses},
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title={The B1 Protein Guides the Biosynthesis of a Lasso Peptide},
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@article{zhang2016instant,
title={Instant Integrated Ultradeep Quantitative-structural Membrane Proteomics Discovered Post-translational Modification Signatures for Human Cys-loop Receptor Subunit Bias},
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title={Data Processing in Bottom-Up Hydrogen Exchange Mass Spectrometry},
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journal={Hydrogen Exchange Mass Spectrometry of Proteins, Fundamentals, Methods, and Applications. Chichester, UK: Wiley},
pages={37--51},
year={2016}
}

Mays, S. G., Okafor, D. C., Whitby, R. J., Goswami, D., Stec, J., Flynn, A. R., Dugan, M. C., Jui, N. T., Griffin, P. R., & Ortlund, E. A.. (2016). Crystal structures of the nuclear receptor, liver receptor homolog 1, bound to synthetic agonists. Journal of biological chemistry, 291(49), 25281–25291.
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title={Crystal Structures of the Nuclear Receptor, Liver Receptor Homolog 1, Bound to Synthetic Agonists},
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Zhang, Z., & Fang, J.. (2016). Extracting information from hydrogen exchange mass spectrometry data. Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications, 107.
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Goswami, D., Marciano, D. P., Pascal, B. D., Chalmers, M. J., & Griffin, P. R.. (2016). Application of differential hydrogen exchange mass spectrometry in small molecule drug discovery. Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications, 209.
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@phdthesis{brown2016integration,
title={Integration of Heterotrimeric G Protein Signaling by the Regulator of G Protein Signaling 14 (RGS14): Independent Regulation of G$\alpha$ Signaling by the RGS Domain and GPR Motif by the RGS domain and GPR motif},
author={Brown, Nicole E},
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Anderson, K. W., Mast, N., Hudgens, J. W., Lin, J. B., Turko, I. V., & Pikuleva, I. A.. (2016). Jbc papers in press. published on april 7, 2016 as manuscript m116. 723577. .
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Cummins, D. J., Espada, A., Novick, S. J., Molina-Martin, M., Stites, R. E., Espinosa, J. F., Broughton, H., Goswami, D., Pascal, B. D., Dodge, J. A., & others. (2016). Two-site evaluation of the repeatability and precision of an automated dual-column hydrogen/deuterium exchange mass spectrometry platform. Analytical chemistry, 88(12), 6607–6614.
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title={Two-site evaluation of the repeatability and precision of an automated dual-column hydrogen/deuterium exchange mass spectrometry platform},
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journal={Analytical chemistry},
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number={12},
pages={6607--6614},
year={2016},
publisher={ACS Publications}
}

Saltzberg, D. J., Broughton, H. B., Pellarin, R., Chalmers, M. J., Espada, A., Dodge, J. A., Pascal, B. D., Griffin, P. R., Humblet, C., & Sali, A.. (2016). A residue-resolved bayesian approach to quantitative interpretation of hydrogen–deuterium exchange from mass spectrometry: application to characterizing protein–ligand interactions. The journal of physical chemistry b, 121(15), 3493–3501.
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title={A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen--Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein--Ligand Interactions},
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journal={The Journal of Physical Chemistry B},
volume={121},
number={15},
pages={3493--3501},
year={2016},
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Hourdel, V., Volant, S., O’Brien, D. P., Chenal, A., Chamot-Rooke, J., Dillies, M., & Brier, S.. (2016). Memhdx: an interactive tool to expedite the statistical validation and visualization of large hdx-ms datasets. Bioinformatics, 32(22), 3413–3419.
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title={MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets},
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volume={32},
number={22},
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Espada, A., Broughton, H., Jones, S., Chalmers, M. J., & Dodge, J. A.. (2016). A binding site on il-17a for inhibitory macrocycles revealed by hydrogen/deuterium exchange mass spectrometry. Journal of medicinal chemistry, 59(5), 2255–2260.
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title={A binding site on IL-17A for inhibitory macrocycles revealed by hydrogen/deuterium exchange mass spectrometry},
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Lössl, P., van de Waterbeemd, M., & Heck, A. J.. (2016). The diverse and expanding role of mass spectrometry in structural and molecular biology. The embo journal, e201694818.
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author={L{\"o}ssl, Philip and van de Waterbeemd, Michiel and Heck, Albert JR},
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Fanning, S. W., Mayne, C. G., Dharmarajan, V., Carlson, K. E., Martin, T. A., Novick, S. J., Toy, W., Green, B., Panchamukhi, S., Katzenellenbogen, B. S., & others. (2016). Estrogen receptor alpha somatic mutations y537s and d538g confer breast cancer endocrine resistance by stabilizing the activating function-2 binding conformation. Elife, 5.
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Gallagher, E. S., & Hudgens, J. W.. (2016). Mapping protein–ligand interactions with proteolytic fragmentation, hydrogen/deuterium exchange-mass spectrometry. In Methods in enzymology (, Vol. 566pp. 357–404). Elsevier.
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Mo, Z., Zhang, Q., Liu, Z., Lauer, J., Shi, Y., Sun, L., Griffin, P. R., & Yang, X.. (2016). Neddylation requires glycyl-trna synthetase to protect activated e2. Nature structural and molecular biology, 23(8), 730.
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title={Hydrogen deuterium exchange mass spectrometry in biopharmaceutical discovery and development--A review},
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journal={Analytica chimica acta},
volume={940},
pages={8--20},
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Chang, M. R., Dharmarajan, V., Doebelin, C., Garcia-Ordonez, R. D., Novick, S. J., Kuruvilla, D. S., Kamenecka, T. M., & Griffin, P. R.. (2016). Synthetic roryt agonists enhance protective immunity. Acs chemical biology, 11(4), 1012–1018.
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Srinivasan, S., Dharmarajan, V., Reed, D. K., Griffin, P. R., & Schmid, S. L.. (2016). Identification and function of conformational dynamics in the multidomain gtpase dynamin. The embo journal, 35(4), 443–457.
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Mayne, L.. (2016). Hydrogen exchange mass spectrometry. In Methods in enzymology (, Vol. 566pp. 335–356). Elsevier.
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Feng, L., Dharmarajan, V., Serrao, E., Hoyte, A., Larue, R. C., Slaughter, A., Sharma, A., Plumb, M. R., Kessl, J. J., Fuchs, J. R., & others. (2016). The competitive interplay between allosteric hiv-1 integrase inhibitor bi/d and ledgf/p75 during the early stage of hiv-1 replication adversely affects inhibitor potency. Acs chemical biology, 11(5), 1313–1321.
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title={The competitive interplay between allosteric HIV-1 integrase inhibitor BI/D and LEDGF/p75 during the early stage of HIV-1 replication adversely affects inhibitor potency},
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Anderson, K. W., Mast, N., Hudgens, J. W., Lin, J. B., Turko, I. V., & Pikuleva, I. A.. (2016). Mapping of the allosteric site in cholesterol hydroxylase cyp46a1 for efavirenz, a drug that stimulates enzyme activity. Journal of biological chemistry, 291(22), 11876–11886.
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title={Mapping of the allosteric site in cholesterol hydroxylase CYP46A1 for efavirenz, a drug that stimulates enzyme activity},
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Zhang, J., May, E., Gross, M., Kendall, D., & Cole, J.. (2015). * hydrogen deuterium exchange mass spectrometry for the analysis of seca dimerization in solution. Mass spectrometry-based strategies for biomolecular structure analysis: steroid metabolites structures and protein-protein interactions, 109.
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journal={Mass Spectrometry-Based Strategies for Biomolecular Structure Analysis: Steroid Metabolites Structures and Protein-Protein Interactions},
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Petrotchenko, E. V., & Borchers, C. H.. (2015). Hdx match software for the data analysis of top-down ecd-ftms hydrogen/deuterium exchange experiments. Journal of the american society for mass spectrometry, 26(11), 1895–1898.
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title={HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments},
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journal={Journal of The American Society for Mass Spectrometry},
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Narayan, V., Landré, V., Ning, J., Hernychova, L., Muller, P., Verma, C., Walkinshaw, M. D., Blackburn, E. A., & Ball, K. L.. (2015). Protein–protein interactions modulate the docking-dependent e3-ubiquitin ligase activity of carboxy-terminus of hsc70-interacting protein (chip). Molecular & cellular proteomics, 14(11), 2973–2987.
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journal={Molecular \& Cellular Proteomics},
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Yan, Y., Grant, G. A., & Gross, M. L.. (2015). Hydrogen–deuterium exchange mass spectrometry reveals unique conformational and chemical transformations occurring upon [4fe-4s] cluster binding in the type 2 l-serine dehydratase from legionella pneumophila. Biochemistry, 54(34), 5322–5328.
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title={Hydrogen--Deuterium Exchange Mass Spectrometry Reveals Unique Conformational and Chemical Transformations Occurring upon [4Fe-4S] Cluster Binding in the Type 2 l-Serine Dehydratase from Legionella pneumophila},
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Goswami, D., Tuske, S., Pascal, B. D., Bauman, J. D., Patel, D., Arnold, E., & Griffin, P. R.. (2015). Differential isotopic enrichment to facilitate characterization of asymmetric multimeric proteins using hydrogen/deuterium exchange mass spectrometry. Analytical chemistry, 87(7), 4015–4022.
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title={Using computational and experimental approaches to understand protein function: application to proprotein convertases and other disease-related proteins},
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author={Marciano, David P and Kuruvilla, Dana S and Pascal, Bruce D and Griffin, Patrick R},
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volume={2015},
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Brown, N. E., Goswami, D., Branch, M. R., Ramineni, S., Ortlund, E. A., Griffin, P. R., & Hepler, J. R.. (2015). Integration of g protein $\alpha$ (g$\alpha$) signaling by the regulator of g protein signaling 14 (rgs14). Journal of biological chemistry, 290(14), 9037–9049.
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@article{brown2015integration,
title={Integration of G protein $\alpha$ (G$\alpha$) signaling by the regulator of G protein signaling 14 (RGS14)},
author={Brown, Nicole E and Goswami, Devrishi and Branch, Mary Rose and Ramineni, Suneela and Ortlund, Eric A and Griffin, Patrick R and Hepler, John R},
journal={Journal of Biological Chemistry},
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title={Hydrogen deuterium mass spectrometry in drug discovery},
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journal={Bioorganic \& medicinal chemistry letters},
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He, W., Bai, G., Zhou, H., Wei, N., White, N. M., Lauer, J., Liu, H., Shi, Y., Dumitru, C. D., Lettieri, K., & others. (2015). Cmt2d neuropathy is linked to the neomorphic binding activity of glycyl-trna synthetase. Nature, 526(7575), 710.
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title={CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase},
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title={Dodecyl maltopyranoside enabled purification of active human GABA type A receptors for deep and direct proteomic sequencing},
author={Zhang, Xi and Miller, Keith W},
journal={Molecular \& Cellular Proteomics},
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Kang, Y., Zhou, E. X., Gao, X., He, Y., Liu, W., Ishchenko, A., Barty, A., White, T. A., Yefanov, O., Han, G. W., & others. (2015). Crystal structure of rhodopsin bound to arrestin by femtosecond x-ray laser. Nature, 523(7562), 561.
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title={Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser},
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Yang, L., Yang, D., De Graaf, C., Moeller, A., West, G. M., Dharmarajan, V., Wang, C., Siu, F. Y., Song, G., Reedtz-Runge, S., & others. (2015). Conformational states of the full-length glucagon receptor. Nature communications, 6, 7859.
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title={Conformational states of the full-length glucagon receptor},
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year={2015},
publisher={Nature Publishing Group}
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Zhao, L., Zhou, E. X., Yi, W., Wu, Z., Liu, Y., Kang, Y., Hou, L., De Waal, P. W., Li, S., Jiang, Y., & others. (2015). Destabilization of strigolactone receptor dwarf14 by binding of ligand and e3-ligase signaling effector dwarf3. Cell research, 25(11), 1219.
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title={Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3},
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Marciano, D. P., Kuruvilla, D. S., Boregowda, S. V., Asteian, A., Hughes, T. S., Garcia-Ordonez, R., Corzo, C. A., Khan, T. M., Novick, S. J., Park, H., & others. (2015). Pharmacological repression of ppary promotes osteogenesis. Nature communications, 6, 7443.
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title={Pharmacological repression of PPARy promotes osteogenesis},
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journal={Nature communications},
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pages={7443},
year={2015},
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Zhang, F., Yao, J., Ke, J., Zhang, L., Lam, V. Q., Xin, X., Zhou, E. X., Chen, J., Brunzelle, J., Griffin, P. R., & others. (2015). Structural basis of jaz repression of myc transcription factors in jasmonate signalling. Nature, 525(7568), 269.
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@article{zhang2015structural,
title={Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling},
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Engen, J. R., & Wales, T. E.. (2015). Analytical aspects of hydrogen exchange mass spectrometry. Annual review of analytical chemistry, 8, 127–148.
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@article{engen2015analytical,
title={Analytical aspects of hydrogen exchange mass spectrometry},
author={Engen, John R and Wales, Thomas E},
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Leurs, U., Mistarz, U. H., & Rand, K. D.. (2015). Getting to the core of protein pharmaceuticals–comprehensive structure analysis by mass spectrometry. European journal of pharmaceutics and biopharmaceutics, 93, 95–109.
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@article{leurs2015getting,
title={Getting to the core of protein pharmaceuticals--Comprehensive structure analysis by mass spectrometry},
author={Leurs, Ulrike and Mistarz, Ulrik H and Rand, Kasper D},
journal={European Journal of Pharmaceutics and Biopharmaceutics},
volume={93},
pages={95--109},
year={2015},
publisher={Elsevier}
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Schuhmacher, J. S., Rossmann, F., Dempwolff, F., Knauer, C., Altegoer, F., Steinchen, W., Dörrich, A. K., Klingl, A., Stephan, M., Linne, U., & others. (2015). Mind-like atpase flhg effects location and number of bacterial flagella during c-ring assembly. Proceedings of the national academy of sciences, 112(10), 3092–3097.
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title={MinD-like ATPase FlhG effects location and number of bacterial flagella during C-ring assembly},
author={Schuhmacher, Jan S and Rossmann, Florian and Dempwolff, Felix and Knauer, Carina and Altegoer, Florian and Steinchen, Wieland and D{\"o}rrich, Anja K and Klingl, Andreas and Stephan, Milena and Linne, Uwe and others},
journal={Proceedings of the National Academy of Sciences},
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Majumdar, R., Middaugh, R. C., Weis, D. D., & Volkin, D. B.. (2015). Hydrogen-deuterium exchange mass spectrometry as an emerging analytical tool for stabilization and formulation development of therapeutic monoclonal antibodies. Journal of pharmaceutical sciences, 104(2), 327–345.
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title={Hydrogen-deuterium exchange mass spectrometry as an emerging analytical tool for stabilization and formulation development of therapeutic monoclonal antibodies},
author={Majumdar, Ranajoy and Middaugh, C Russell and Weis, David D and Volkin, David B},
journal={Journal of pharmaceutical sciences},
volume={104},
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Mielcarek, A., Blauenburg, B., Miethke, M., & Marahiel, M. A.. (2015). Molecular insights into frataxin-mediated iron supply for heme biosynthesis in bacillus subtilis. Plos one, 10(3), e0122538.
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title={Molecular insights into frataxin-mediated iron supply for heme biosynthesis in Bacillus subtilis},
author={Mielcarek, Andreas and Blauenburg, Bastian and Miethke, Marcus and Marahiel, Mohamed A},
journal={PLoS One},
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Kojetin, D. J., Matta-Camacho, E., Hughes, T. S., Srinivasan, S., Nwachukwu, J. C., Cavett, V., Nowak, J., Chalmers, M. J., Marciano, D. P., Kamenecka, T. M., & others. (2015). Structural mechanism for signal transduction in rxr nuclear receptor heterodimers. Nature communications, 6, 8013.
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title={Structural mechanism for signal transduction in RXR nuclear receptor heterodimers},
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Li, Z., Huang, R. Y-C., Yopp, D. C., Hileman, T. H., Santangelo, T. J., Hurwitz, J., Hudgens, J. W., & Kelman, Z.. (2014). A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein. Nucleic acids research, 42(9), 5776–5789.
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title={A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein},
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Goswami, D., Callaway, C., Pascal, B. D., Kumar, R., Edwards, D. P., & Griffin, P. R.. (2014). Influence of domain interactions on conformational mobility of the progesterone receptor detected by hydrogen/deuterium exchange mass spectrometry. Structure, 22(7), 961–973.
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title={Influence of domain interactions on conformational mobility of the progesterone receptor detected by hydrogen/deuterium exchange mass spectrometry},
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journal={Structure},
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Li, J., Rodnin, M. V., Ladokhin, A. S., & Gross, M. L.. (2014). Hydrogen–deuterium exchange and mass spectrometry reveal the ph-dependent conformational changes of diphtheria toxin t domain. Biochemistry, 53(43), 6849–6856.
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title={Hydrogen--deuterium exchange and mass spectrometry reveal the pH-dependent conformational changes of diphtheria toxin T domain},
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journal={Biochemistry},
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Shkriabai, N., Dharmarajan, V., Slaughter, A., Kessl, J. J., Larue, R. C., Feng, L., Fuchs, J. R., Griffin, P. R., & Kvaratskhelia, M.. (2014). A critical role of the c-terminal segment for allosteric inhibitor-induced aberrant multimerization of hiv-1 integrase. Journal of biological chemistry, 289(38), 26430–26440.
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title={A critical role of the C-terminal segment for allosteric inhibitor-induced aberrant multimerization of HIV-1 integrase},
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Armstrong, E. H.. ((2014). The role of fatty acid binding protein 5 (fabp5) in peroxisome proliferator-activated receptor β/δ (pparβ/δ)–mediated fatty acid and retinoic acid signaling: a structural perspective.). PhD Thesis.
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@phdthesis{armstrong2014role,
title={The Role of Fatty Acid Binding Protein 5 (FABP5) in Peroxisome Proliferator-Activated Receptor β/δ (PPARβ/δ)--Mediated Fatty Acid and Retinoic Acid Signaling: A Structural Perspective},
author={Armstrong, Eric H},
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school={Emory University}
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Zhang, Y., Majumder, E. L-W., Yue, H., Blankenship, R. E., & Gross, M. L.. (2014). Structural analysis of diheme cytochrome c by hydrogen–deuterium exchange mass spectrometry and homology modeling. Biochemistry, 53(35), 5619–5630.
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title={Structural Analysis of Diheme Cytochrome c by Hydrogen--Deuterium Exchange Mass Spectrometry and Homology Modeling},
author={Zhang, Ying and Majumder, Erica L-W and Yue, Hai and Blankenship, Robert E and Gross, Michael L},
journal={Biochemistry},
volume={53},
number={35},
pages={5619--5630},
year={2014},
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Wowor, A. J., Yan, Y., Auclair, S. M., Yu, D., Zhang, J., May, E. R., Gross, M. L., Kendall, D. A., & Cole, J. L.. (2014). Analysis of seca dimerization in solution. Biochemistry, 53(19), 3248–3260.
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title={Analysis of SecA dimerization in solution},
author={Wowor, Andy J and Yan, Yuetian and Auclair, Sarah M and Yu, Dongmei and Zhang, Jun and May, Eric R and Gross, Michael L and Kendall, Debra A and Cole, James L},
journal={Biochemistry},
volume={53},
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West, G. M., Willard, F. S., Sloop, K. W., Showalter, A. D., Pascal, B. D., & Griffin, P. R.. (2014). Glucagon-like peptide-1 receptor ligand interactions: structural cross talk between ligands and the extracellular domain. Plos one, 9(9), e105683.
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title={Glucagon-like peptide-1 receptor ligand interactions: structural cross talk between ligands and the extracellular domain},
author={West, Graham M and Willard, Francis S and Sloop, Kyle W and Showalter, Aaron D and Pascal, Bruce D and Griffin, Patrick R},
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Wang, J.. (2014). Interaction of the components in human and escherichia coli pyruvate dehydrogenase multienzyme complexes Rutgers The State University of New Jersey-Newark.
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title={Interaction of the components in human and escherichia coli pyruvate dehydrogenase multienzyme complexes},
author={Wang, Junjie},
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Zheng, J., Yong, H. Y., Panutdaporn, N., Liu, C., Tang, K., & Luo, D.. (2014). High-resolution hdx-ms reveals distinct mechanisms of rna recognition and activation by rig-i and mda5. Nucleic acids research, 43(2), 1216–1230.
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title={High-resolution HDX-MS reveals distinct mechanisms of RNA recognition and activation by RIG-I and MDA5},
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Qiang, G., Xue, S., Yang, J. J., Du, G., Pang, X., Li, X., Goswami, D., Griffin, P. R., Ortlund, E. A., Chan, C. B., & others. (2014). Identification of a small molecular insulin receptor agonist with potent antidiabetes activity. Diabetes, 63(4), 1394–1409.
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title={Identification of a small molecular insulin receptor agonist with potent antidiabetes activity},
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journal={Diabetes},
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Zhang, Y., Goswami, D., Wang, D., Wang, T. A., Sen, S., Magliery, T. J., Griffin, P. R., Wang, F., & Schultz, P. G.. (2014). An antibody with a variable-region coiled-coil “knob” domain. Angewandte chemie, 126(1), 136–139.
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@article{zhang2014antibody,
title={An Antibody with a Variable-Region Coiled-Coil “Knob” Domain},
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journal={Angewandte Chemie},
volume={126},
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Lindner, R., Lou, X., Reinstein, J., Shoeman, R. L., Hamprecht, F. A., & Winkler, A.. (2014). Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation. Journal of the american society for mass spectrometry, 25(6), 1018–1028.
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@article{lindner2014hexicon,
title={Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation},
author={Lindner, Robert and Lou, Xinghua and Reinstein, Jochen and Shoeman, Robert L and Hamprecht, Fred A and Winkler, Andreas},
journal={Journal of the American Society for Mass Spectrometry},
volume={25},
number={6},
pages={1018--1028},
year={2014},
publisher={Springer}
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Armstrong, E. H., Goswami, D., Griffin, P. R., Noy, N., & Ortlund, E. A.. (2014). Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor $\beta$/$\delta$ (fabp5-ppar$\beta$/$\delta$) signaling pathway. Journal of biological chemistry, 289(21), 14941–14954.
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@article{armstrong2014structural,
title={Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor $\beta$/$\delta$ (FABP5-PPAR$\beta$/$\delta$) signaling pathway},
author={Armstrong, Eric H and Goswami, Devrishi and Griffin, Patrick R and Noy, Noa and Ortlund, Eric A},
journal={Journal of Biological Chemistry},
volume={289},
number={21},
pages={14941--14954},
year={2014},
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Kirschke, E., Goswami, D., Southworth, D., Griffin, P. R., & Agard, D. A.. (2014). Glucocorticoid receptor function regulated by coordinated action of the hsp90 and hsp70 chaperone cycles. Cell, 157(7), 1685–1697.
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@article{kirschke2014glucocorticoid,
title={Glucocorticoid receptor function regulated by coordinated action of the Hsp90 and Hsp70 chaperone cycles},
author={Kirschke, Elaine and Goswami, Devrishi and Southworth, Daniel and Griffin, Patrick R and Agard, David A},
journal={Cell},
volume={157},
number={7},
pages={1685--1697},
year={2014},
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Hughes, T. S., Giri, P. K., De Vera, I. M. S., Marciano, D. P., Kuruvilla, D. S., Shin, Y., Blayo, A., Kamenecka, T. M., Burris, T. P., Griffin, P. R., & others. (2014). An alternate binding site for ppar$\gamma$ ligands. Nature communications, 5, 3571.
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title={An alternate binding site for PPAR$\gamma$ ligands},
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journal={Nature communications},
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Pirrone, G. F., Iacob, R. E., & Engen, J. R.. (2014). Applications of hydrogen/deuterium exchange ms from 2012 to 2014. Analytical chemistry, 87(1), 99–118.
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title={Applications of hydrogen/deuterium exchange MS from 2012 to 2014},
author={Pirrone, Gregory F and Iacob, Roxana E and Engen, John R},
journal={Analytical chemistry},
volume={87},
number={1},
pages={99--118},
year={2014},
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Underbakke, E. S., Iavarone, A. T., Chalmers, M. J., Pascal, B. D., Novick, S., Griffin, P. R., & Marletta, M. A.. (2014). Nitric oxide-induced conformational changes in soluble guanylate cyclase. Structure, 22(4), 602–611.
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title={Nitric oxide-induced conformational changes in soluble guanylate cyclase},
author={Underbakke, Eric S and Iavarone, Anthony T and Chalmers, Michael J and Pascal, Bruce D and Novick, Scott and Griffin, Patrick R and Marletta, Michael A},
journal={Structure},
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Marciano, D. P., Dharmarajan, V., & Griffin, P. R.. (2014). Hdx-ms guided drug discovery: small molecules and biopharmaceuticals. Current opinion in structural biology, 28, 105–111.
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title={HDX-MS guided drug discovery: small molecules and biopharmaceuticals},
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Huang, R. Y-C., & Chen, G.. (2014). Higher order structure characterization of protein therapeutics by hydrogen/deuterium exchange mass spectrometry. Analytical and bioanalytical chemistry, 406(26), 6541–6558.
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title={Higher order structure characterization of protein therapeutics by hydrogen/deuterium exchange mass spectrometry},
author={Huang, Richard Y-C and Chen, Guodong},
journal={Analytical and bioanalytical chemistry},
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number={26},
pages={6541--6558},
year={2014},
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Rey, M., Sarpe, V., Burns, K. M., Buse, J., Baker, C. A., Van Dijk, M., Wordeman, L., Bonvin, A. M., & Schriemer, D. C.. (2014). Mass spec studio for integrative structural biology. Structure, 22(10), 1538–1548.
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Li, Z.. ((2013). Archaeal dna replication proteins: members and functions.). PhD Thesis.
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title={Archaeal DNA replication proteins: Members and functions},
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Liu, Q., Easterling, M. L., & Agar, J. N.. (2013). Resolving isotopic fine structure to detect and quantify natural abundance-and hydrogen/deuterium exchange-derived isotopomers. Analytical chemistry, 86(1), 820–825.
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title={Resolving isotopic fine structure to detect and quantify natural abundance-and hydrogen/deuterium exchange-derived isotopomers},
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Hu, Y., & others. (2013). Application of hydrogen-deuterium exchange/mass spectrometry for determination of cytochrome c orientation on sams.. .
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title={Application of Hydrogen-Deuterium Exchange/Mass Spectrometry for Determination of Cytochrome c Orientation on SAMs.},
author={Hu, Yuzhe and others},
year={2013}
}

Singh, H.. ((2013). Hydrogen deuterium exchange mass spectrometry for protein-protein interaction and structural dynamics.). PhD Thesis.
[Bibtex]

@phdthesis{singh2013hydrogen,
title={Hydrogen deuterium exchange mass spectrometry for protein-protein interaction and structural dynamics},
author={Singh, Harsimran},
year={2013},
school={University of Alabama Libraries}
}

Zhang, Q.. ((2013). Hydrogen/deuterium exchange coupled with ft-icr ms–instrumentation, software development and applications.). PhD Thesis.
[Bibtex]

@phdthesis{zhang2013hydrogen,
title={Hydrogen/deuterium exchange coupled with FT-ICR MS--Instrumentation, software development and applications},
author={Zhang, Qian},
year={2013},
school={The Florida State University}
}

Wang, X., Li, Q., & Davies, M.. (2013). Development of antibody arrays for monoclonal antibody higher order structure analysis. Frontiers in pharmacology, 4, 103.
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@article{wang2013development,
title={Development of antibody arrays for monoclonal antibody Higher Order Structure analysis},
author={Wang, Xing and Li, Qing and Davies, Michael},
journal={Frontiers in pharmacology},
volume={4},
pages={103},
year={2013},
publisher={Frontiers}
}

Huang, R. Y-C., & Hudgens, J. W.. (2013). Effects of desialylation on human α1-acid glycoprotein− ligand interactions. Biochemistry, 52(40), 7127–7136.
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@article{huang2013effects,
title={Effects of Desialylation on Human α1-Acid Glycoprotein− Ligand Interactions},
author={Huang, Richard Y-C and Hudgens, Jeffrey W},
journal={Biochemistry},
volume={52},
number={40},
pages={7127--7136},
year={2013},
publisher={ACS Publications}
}

Underbakke, E. S., Iavarone, A. T., & Marletta, M. A.. (2013). Higher-order interactions bridge the nitric oxide receptor and catalytic domains of soluble guanylate cyclase. Proceedings of the national academy of sciences, 110(17), 6777–6782.
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@article{underbakke2013higher,
title={Higher-order interactions bridge the nitric oxide receptor and catalytic domains of soluble guanylate cyclase},
author={Underbakke, Eric S and Iavarone, Anthony T and Marletta, Michael A},
journal={Proceedings of the National Academy of Sciences},
volume={110},
number={17},
pages={6777--6782},
year={2013},
publisher={National Acad Sciences}
}

Zhang, J., Ramachandran, P., Kumar, R., & Gross, M. L.. (2013). H/d exchange centroid monitoring is insufficient to show differences in the behavior of protein states. Journal of the american society for mass spectrometry, 24(3), 450–453.
[Bibtex]

@article{zhang2013h,
title={H/D exchange centroid monitoring is insufficient to show differences in the behavior of protein states},
author={Zhang, Jun and Ramachandran, Pradeep and Kumar, Rajiv and Gross, Michael L},
journal={Journal of the American Society for Mass Spectrometry},
volume={24},
number={3},
pages={450--453},
year={2013},
publisher={Springer}
}

Goswami, D., Devarakonda, S., Chalmers, M. J., Pascal, B. D., Spiegelman, B. M., & Griffin, P. R.. (2013). Time window expansion for hdx analysis of an intrinsically disordered protein. Journal of the american society for mass spectrometry, 24(10), 1584–1592.
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@article{goswami2013time,
title={Time window expansion for HDX analysis of an intrinsically disordered protein},
author={Goswami, Devrishi and Devarakonda, Srikripa and Chalmers, Michael J and Pascal, Bruce D and Spiegelman, Bruce M and Griffin, Patrick R},
journal={Journal of the American Society for Mass Spectrometry},
volume={24},
number={10},
pages={1584--1592},
year={2013},
publisher={Springer}
}

Guttman, M., Weis, D. D., Engen, J. R., & Lee, K. K.. (2013). Analysis of overlapped and noisy hydrogen/deuterium exchange mass spectra. Journal of the american society for mass spectrometry, 24(12), 1906–1912.
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@article{guttman2013analysis,
title={Analysis of overlapped and noisy hydrogen/deuterium exchange mass spectra},
author={Guttman, Miklos and Weis, David D and Engen, John R and Lee, Kelly K},
journal={Journal of the American Society for Mass Spectrometry},
volume={24},
number={12},
pages={1906--1912},
year={2013},
publisher={Springer}
}

Konermann, L., Vahidi, S., & Sowole, M. A.. (2013). Mass spectrometry methods for studying structure and dynamics of biological macromolecules. Analytical chemistry, 86(1), 213–232.
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@article{konermann2013mass,
title={Mass spectrometry methods for studying structure and dynamics of biological macromolecules},
author={Konermann, Lars and Vahidi, Siavash and Sowole, Modupeola A},
journal={Analytical chemistry},
volume={86},
number={1},
pages={213--232},
year={2013},
publisher={ACS Publications}
}

Konijnenberg, A., Butterer, A., & Sobott, F.. (2013). Native ion mobility-mass spectrometry and related methods in structural biology. Biochimica et biophysica acta (bba)-proteins and proteomics, 1834(6), 1239–1256.
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@article{konijnenberg2013native,
title={Native ion mobility-mass spectrometry and related methods in structural biology},
author={Konijnenberg, A and Butterer, A and Sobott, F},
journal={Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics},
volume={1834},
number={6},
pages={1239--1256},
year={2013},
publisher={Elsevier}
}

Nakorchevsky, A., & Yates, J.. (2012). 1.17 mass spectrometry. .
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@article{nakorchevsky20121,
title={1.17 Mass Spectrometry},
author={Nakorchevsky, A and Yates, JR},
year={2012},
publisher={Elsevier}
}

Meyer, M., Shah, S., & Rao, A.. (2012). A paper to be submitted for publication.. The arabidopsis crinkly4 receptor-like kinase and homologs: regulation of kinase activity through intra-and intermolecular interactions, 1001, 116.
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@article{meyer2012paper,
title={A paper to be submitted for publication.},
author={Meyer, MR and Shah, S and Rao, AG},
journal={The Arabidopsis CRINKLY4 receptor-like kinase and homologs: Regulation of kinase activity through intra-and intermolecular interactions},
volume={1001},
pages={116},
year={2012}
}

Fajer, P. G., Bou-Assaf, G. M., & Marshall, A. G.. (2012). Improved sequence resolution by global analysis of overlapped peptides in hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 23(7), 1202–1208.
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@article{fajer2012improved,
title={Improved sequence resolution by global analysis of overlapped peptides in hydrogen/deuterium exchange mass spectrometry},
author={Fajer, Piotr G and Bou-Assaf, George M and Marshall, Alan G},
journal={Journal of the American Society for Mass Spectrometry},
volume={23},
number={7},
pages={1202--1208},
year={2012},
publisher={Springer}
}

Kaur, P., & Chance, M. R.. (2012). The utility of mass spectrometry based structural proteomics in biopharmaceutical biologics development. In Integrative proteomics InTech.
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@incollection{kaur2012utility,
title={The utility of mass spectrometry based structural proteomics in biopharmaceutical biologics development},
author={Kaur, Parminder and Chance, Mark R},
booktitle={Integrative Proteomics},
year={2012},
publisher={InTech}
}

Wani, A. H., & Udgaonkar, J. B.. (2012). Mass spectrometry studies of protein folding. Curr sci, 102(2), 245–265.
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@article{wani2012mass,
title={Mass spectrometry studies of protein folding},
author={Wani, Ajazul Hamid and Udgaonkar, Jayant B},
journal={Curr Sci},
volume={102},
number={2},
pages={245--265},
year={2012}
}

Lampi, K. J., Fox, C. B., & David, L. L.. (2012). Changes in solvent accessibility of wild-type and deamidated $\beta$b2-crystallin following complex formation with $\alpha$a-crystallin. Experimental eye research, 104, 48–58.
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@article{lampi2012changes,
title={Changes in solvent accessibility of wild-type and deamidated $\beta$B2-crystallin following complex formation with $\alpha$A-crystallin},
author={Lampi, Kirsten J and Fox, Cade B and David, Larry L},
journal={Experimental eye research},
volume={104},
pages={48--58},
year={2012},
publisher={Elsevier}
}

Bobst, C. E., & Kaltashov, I. A.. (2012). Localizing flexible regions in proteins using hydrogen–deuterium exchange mass spectrometry. In Intrinsically disordered protein analysis (pp. 375–385). Springer.
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@incollection{bobst2012localizing,
title={Localizing flexible regions in proteins using hydrogen--deuterium exchange mass spectrometry},
author={Bobst, Cedric E and Kaltashov, Igor A},
booktitle={Intrinsically Disordered Protein Analysis},
pages={375--385},
year={2012},
publisher={Springer}
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Prage, E. B.. (2012). Structural studies of inhibition of the human inducible prostaglandin e synthase mpges1 Vanderbilt University.
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@book{prage2012structural,
title={Structural studies of inhibition of the human inducible prostaglandin E synthase MPGES1},
author={Prage, Edward B},
year={2012},
publisher={Vanderbilt University}
}

Miller, D. E., Prasannan, C. B., Villar, M. T., Fenton, A. W., & Artigues, A.. (2012). Hdxfinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry. Journal of the american society for mass spectrometry, 23(2), 425–429.
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@article{miller2012hdxfinder,
title={HDXFinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry},
author={Miller, Danny E and Prasannan, Charulata B and Villar, Maria T and Fenton, Aron W and Artigues, Antonio},
journal={Journal of the American Society for Mass Spectrometry},
volume={23},
number={2},
pages={425--429},
year={2012},
publisher={Springer}
}

Mizwicki, M. T., Menegaz, D., Zhang, J., Barrientos-Durán, A., Tse, S., Cashman, J. R., Griffin, P. R., & Fiala, M.. (2012). Genomic and nongenomic signaling induced by 1$\alpha$, 25 (oh) 2-vitamin d 3 promotes the recovery of amyloid-$\beta$ phagocytosis by alzheimer’s disease macrophages. Journal of alzheimer’s disease, 29(1), 51–62.
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@article{mizwicki2012genomic,
title={Genomic and nongenomic signaling induced by 1$\alpha$, 25 (OH) 2-vitamin D 3 promotes the recovery of amyloid-$\beta$ phagocytosis by Alzheimer's disease macrophages},
author={Mizwicki, Mathew T and Menegaz, Danusa and Zhang, Jun and Barrientos-Dur{\'a}n, Antonio and Tse, Stephen and Cashman, John R and Griffin, Patrick R and Fiala, Milan},
journal={Journal of Alzheimer's Disease},
volume={29},
number={1},
pages={51--62},
year={2012},
publisher={IOS Press}
}

Brock, A.. (2012). Fragmentation hydrogen exchange mass spectrometry: a review of methodology and applications. Protein expression and purification, 84(1), 19–37.
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@article{brock2012fragmentation,
title={Fragmentation hydrogen exchange mass spectrometry: A review of methodology and applications},
author={Brock, Ansgar},
journal={Protein expression and purification},
volume={84},
number={1},
pages={19--37},
year={2012},
publisher={Elsevier}
}

Walters, B. T., Ricciuti, A., Mayne, L., & Englander, W. S.. (2012). Minimizing back exchange in the hydrogen exchange-mass spectrometry experiment. Journal of the american society for mass spectrometry, 23(12), 2132–2139.
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@article{walters2012minimizing,
title={Minimizing back exchange in the hydrogen exchange-mass spectrometry experiment},
author={Walters, Benjamin T and Ricciuti, Alec and Mayne, Leland and Englander, S Walter},
journal={Journal of the American Society for Mass Spectrometry},
volume={23},
number={12},
pages={2132--2139},
year={2012},
publisher={Springer}
}

Hughes, T. S., Chalmers, M. J., Novick, S., Kuruvilla, D. S., Chang, M. R., Kamenecka, T. M., Rance, M., Johnson, B. A., Burris, T. P., Griffin, P. R., & others. (2012). Ligand and receptor dynamics contribute to the mechanism of graded ppar$\gamma$ agonism. Structure, 20(1), 139–150.
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@article{hughes2012ligand,
title={Ligand and receptor dynamics contribute to the mechanism of graded PPAR$\gamma$ agonism},
author={Hughes, Travis S and Chalmers, Michael J and Novick, Scott and Kuruvilla, Dana S and Chang, Mi Ra and Kamenecka, Theodore M and Rance, Mark and Johnson, Bruce A and Burris, Thomas P and Griffin, Patrick R and others},
journal={Structure},
volume={20},
number={1},
pages={139--150},
year={2012},
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}

Percy, A. J., Rey, M., Burns, K. M., & Schriemer, D. C.. (2012). Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry—a review. Analytica chimica acta, 721, 7–21.
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@article{percy2012probing,
title={Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry—a review},
author={Percy, Andrew J and Rey, Martial and Burns, Kyle M and Schriemer, David C},
journal={Analytica chimica acta},
volume={721},
pages={7--21},
year={2012},
publisher={Elsevier}
}

Soon, F., Ng, L., Zhou, E. X., West, G. M., Kovach, A., Tan, M. E., Suino-Powell, K. M., He, Y., Xu, Y., Chalmers, M. J., & others. (2012). Molecular mimicry regulates aba signaling by snrk2 kinases and pp2c phosphatases. Science, 335(6064), 85–88.
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@article{soon2012molecular,
title={Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases},
author={Soon, Fen-Fen and Ng, Ley-Moy and Zhou, X Edward and West, Graham M and Kovach, Amanda and Tan, MH Eileen and Suino-Powell, Kelly M and He, Yuanzheng and Xu, Yong and Chalmers, Michael J and others},
journal={Science},
volume={335},
number={6064},
pages={85--88},
year={2012},
publisher={American Association for the Advancement of Science}
}

Pascal, B. D., Willis, S., Lauer, J. L., Landgraf, R. R., West, G. M., Marciano, D., Novick, S., Goswami, D., Chalmers, M. J., & Griffin, P. R.. (2012). Hdx workbench: software for the analysis of h/d exchange ms data. Journal of the american society for mass spectrometry, 23(9), 1512–1521.
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@article{pascal2012hdx,
title={HDX workbench: software for the analysis of H/D exchange MS data},
author={Pascal, Bruce D and Willis, Scooter and Lauer, Janelle L and Landgraf, Rachelle R and West, Graham M and Marciano, David and Novick, Scott and Goswami, Devrishi and Chalmers, Michael J and Griffin, Patrick R},
journal={Journal of the American Society for Mass Spectrometry},
volume={23},
number={9},
pages={1512--1521},
year={2012},
publisher={Springer}
}

Zhang, Z., Zhang, A., & Xiao, G.. (2012). Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing. Analytical chemistry, 84(11), 4942–4949.
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@article{zhang2012improved,
title={Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing},
author={Zhang, Zhongqi and Zhang, Aming and Xiao, Gang},
journal={Analytical chemistry},
volume={84},
number={11},
pages={4942--4949},
year={2012},
publisher={ACS Publications}
}

Kan, Z., Mayne, L., Chetty, P. S., & Englander, W. S.. (2011). Exms: data analysis for hx-ms experiments. Journal of the american society for mass spectrometry, 22(11), 1906.
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@article{kan2011exms,
title={ExMS: data analysis for HX-MS experiments},
author={Kan, Zhong-Yuan and Mayne, Leland and Chetty, Palaniappan Sevugan and Englander, S Walter},
journal={Journal of the American Society for Mass Spectrometry},
volume={22},
number={11},
pages={1906},
year={2011},
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}

Lou, X.. ((2011). Biomedical data analysis with prior knowledge: modeling and learning.). PhD Thesis.
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@phdthesis{lou2011biomedical,
title={Biomedical Data Analysis with Prior Knowledge: Modeling and Learning},
author={Lou, Xinghua},
year={2011}
}

Kerfoot, S. A., & Gross, M. L.. (2011). Chemical footprinting for determining protein properties and interactions. Protein and peptide mass spectrometry in drug discovery, 175–211.
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title={Chemical Footprinting for Determining Protein Properties and Interactions},
author={Kerfoot, Sandra A and Gross, Michael L},
journal={Protein and Peptide Mass Spectrometry in Drug Discovery},
pages={175--211},
year={2011},
publisher={Wiley Online Library}
}

Wright, E., Busby, S. A., Wisecarver, S., Vincent, J., Griffin, P. R., & Fernandez, E. J.. (2011). Helix 11 dynamics is critical for constitutive androstane receptor activity. Structure, 19(1), 37–44.
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@article{wright2011helix,
title={Helix 11 dynamics is critical for constitutive androstane receptor activity},
author={Wright, Edward and Busby, Scott A and Wisecarver, Sarah and Vincent, Jeremy and Griffin, Patrick R and Fernandez, Elias J},
journal={Structure},
volume={19},
number={1},
pages={37--44},
year={2011},
publisher={Elsevier}
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Cortines, J. R., Monroe, E. B., Kang, S., & Prevelige Jr, P. E.. (2011). A retroviral chimeric capsid protein reveals the role of the n-terminal $\beta$-hairpin in mature core assembly. Journal of molecular biology, 410(4), 641–652.
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title={A retroviral chimeric capsid protein reveals the role of the N-terminal $\beta$-hairpin in mature core assembly},
author={Cortines, Juliana R and Monroe, Eric B and Kang, Sebyung and Prevelige Jr, Peter E},
journal={Journal of molecular biology},
volume={410},
number={4},
pages={641--652},
year={2011},
publisher={Elsevier}
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Kreshuk, A., Stankiewicz, M., Lou, X., Kirchner, M., Hamprecht, F. A., & Mayer, M. P.. (2011). Automated detection and analysis of bimodal isotope peak distributions in h/d exchange mass spectrometry using hexicon. International journal of mass spectrometry, 302(1-3), 125–131.
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title={Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon},
author={Kreshuk, Anna and Stankiewicz, Marta and Lou, Xinghua and Kirchner, Marc and Hamprecht, Fred A and Mayer, Matthias P},
journal={International journal of mass spectrometry},
volume={302},
number={1-3},
pages={125--131},
year={2011},
publisher={Elsevier}
}

Liu, S., Liu, L., Uzuner, U., Zhou, X., Gu, M., Shi, W., Zhang, Y., Dai, S. Y., & Yuan, J. S.. (2011). Hdx-analyzer: a novel package for statistical analysis of protein structure dynamics. Bmc bioinformatics, 12(1), S43.
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@article{liu2011hdx,
title={HDX-analyzer: a novel package for statistical analysis of protein structure dynamics},
author={Liu, Sanmin and Liu, Lantao and Uzuner, Ugur and Zhou, Xin and Gu, Manxi and Shi, Weibing and Zhang, Yixiang and Dai, Susie Y and Yuan, Joshua S},
journal={BMC bioinformatics},
volume={12},
number={1},
pages={S43},
year={2011},
publisher={BioMed Central}
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Chalmers, M. J., Pascal, B. D., Willis, S., Zhang, J., Iturria, S. J., Dodge, J. A., & Griffin, P. R.. (2011). Methods for the analysis of high precision differential hydrogen–deuterium exchange data. International journal of mass spectrometry, 302(1-3), 59–68.
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@article{chalmers2011methods,
title={Methods for the analysis of high precision differential hydrogen--deuterium exchange data},
author={Chalmers, Michael J and Pascal, Bruce D and Willis, Scooter and Zhang, Jun and Iturria, Stephen J and Dodge, Jeffery A and Griffin, Patrick R},
journal={International journal of mass spectrometry},
volume={302},
number={1-3},
pages={59--68},
year={2011},
publisher={Elsevier}
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Bou-Assaf, G. M.. (2011). Solution-phase hydrogen/deuterium exchange monitored by fourier transform ion cyclotron resonance mass spectrometry: technique development and application to muscle biochemistry The Florida State University.
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@book{bou2011solution,
title={Solution-phase hydrogen/deuterium exchange monitored by Fourier transform ion cyclotron resonance mass spectrometry: Technique development and application to muscle biochemistry},
author={Bou-Assaf, George Michel},
year={2011},
publisher={The Florida State University}
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Kavan, D., & Man, P.. (2011). Mstools—web based application for visualization and presentation of hxms data. International journal of mass spectrometry, 302(1-3), 53–58.
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@article{kavan2011mstools,
title={MSTools—Web based application for visualization and presentation of HXMS data},
author={Kavan, Daniel and Man, Petr},
journal={International journal of mass spectrometry},
volume={302},
number={1-3},
pages={53--58},
year={2011},
publisher={Elsevier}
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Houde, D., Berkowitz, S. A., & Engen, J. R.. (2011). The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies. Journal of pharmaceutical sciences, 100(6), 2071–2086.
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@article{houde2011utility,
title={The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies},
author={Houde, Damian and Berkowitz, Steven A and Engen, John R},
journal={Journal of pharmaceutical sciences},
volume={100},
number={6},
pages={2071--2086},
year={2011},
publisher={Elsevier}
}

Solt, L. A., Kumar, N., Nuhant, P., Wang, Y., Lauer, J. L., Liu, J., Istrate, M. A., Kamenecka, T. M., Roush, W. R., Vidović, D., & others. (2011). Suppression of t h 17 differentiation and autoimmunity by a synthetic ror ligand. Nature, 472(7344), 491.
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@article{solt2011suppression,
title={Suppression of T H 17 differentiation and autoimmunity by a synthetic ROR ligand},
author={Solt, Laura A and Kumar, Naresh and Nuhant, Philippe and Wang, Yongjun and Lauer, Janelle L and Liu, Jin and Istrate, Monica A and Kamenecka, Theodore M and Roush, William R and Vidovi{\'c}, Du{\v{s}}ica and others},
journal={Nature},
volume={472},
number={7344},
pages={491},
year={2011},
publisher={Nature Publishing Group}
}

Ng, L., Soon, F., Zhou, E. X., West, G. M., Kovach, A., Suino-Powell, K. M., Chalmers, M. J., Li, J., Yong, E., Zhu, J., & others. (2011). Structural basis for basal activity and autoactivation of abscisic acid (aba) signaling snrk2 kinases. Proceedings of the national academy of sciences, 108(52), 21259–21264.
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@article{ng2011structural,
title={Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases},
author={Ng, Ley-Moy and Soon, Fen-Fen and Zhou, X Edward and West, Graham M and Kovach, Amanda and Suino-Powell, Kelly M and Chalmers, Michael J and Li, Jun and Yong, Eu-Leong and Zhu, Jian-Kang and others},
journal={Proceedings of the National Academy of Sciences},
volume={108},
number={52},
pages={21259--21264},
year={2011},
publisher={National Acad Sciences}
}

Zhang, J., Chalmers, M. J., Stayrook, K. R., Burris, L. L., Wang, Y., Busby, S. A., Pascal, B. D., Garcia-Ordonez, R. D., Bruning, J. B., Istrate, M. A., & others. (2011). Dna binding alters coactivator interaction surfaces of the intact vdr–rxr complex. Nature structural and molecular biology, 18(5), 556.
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@article{zhang2011dna,
title={DNA binding alters coactivator interaction surfaces of the intact VDR--RXR complex},
author={Zhang, Jun and Chalmers, Michael J and Stayrook, Keith R and Burris, Lorri L and Wang, Yongjun and Busby, Scott A and Pascal, Bruce D and Garcia-Ordonez, Ruben D and Bruning, John B and Istrate, Monica A and others},
journal={Nature Structural and Molecular Biology},
volume={18},
number={5},
pages={556},
year={2011},
publisher={Nature Publishing Group}
}

Chalmers, M. J., Busby, S. A., Pascal, B. D., West, G. M., & Griffin, P. R.. (2011). Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions. Expert review of proteomics, 8(1), 43–59.
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@article{chalmers2011differential,
title={Differential hydrogen/deuterium exchange mass spectrometry analysis of protein--ligand interactions},
author={Chalmers, Michael J and Busby, Scott A and Pascal, Bruce D and West, Graham M and Griffin, Patrick R},
journal={Expert review of proteomics},
volume={8},
number={1},
pages={43--59},
year={2011},
publisher={Taylor \& Francis}
}

West, G. M., Chien, E. Y., Katritch, V., Gatchalian, J., Chalmers, M. J., Stevens, R. C., & Griffin, P. R.. (2011). Ligand-dependent perturbation of the conformational ensemble for the gpcr $\beta$2 adrenergic receptor revealed by hdx. Structure, 19(10), 1424–1432.
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@article{west2011ligand,
title={Ligand-dependent perturbation of the conformational ensemble for the GPCR $\beta$2 adrenergic receptor revealed by HDX},
author={West, Graham M and Chien, Ellen YT and Katritch, Vsevolod and Gatchalian, Jovylyn and Chalmers, Michael J and Stevens, Raymond C and Griffin, Patrick R},
journal={Structure},
volume={19},
number={10},
pages={1424--1432},
year={2011},
publisher={Elsevier}
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Wang, Y., Kumar, N., Solt, L. A., Richardson, T. I., Helvering, L. M., Crumbley, C., Garcia-Ordonez, R. D., Stayrook, K. R., Zhang, X., Novick, S., & others. (2010). Modulation of retinoic acid receptor-related orphan receptor $\alpha$ and $\gamma$ activity by 7-oxygenated sterol ligands. Journal of biological chemistry, 285(7), 5013–5025.
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@article{wang2010modulation,
title={Modulation of retinoic acid receptor-related orphan receptor $\alpha$ and $\gamma$ activity by 7-oxygenated sterol ligands},
author={Wang, Yongjun and Kumar, Naresh and Solt, Laura A and Richardson, Timothy I and Helvering, Leah M and Crumbley, Christine and Garcia-Ordonez, Ruben D and Stayrook, Keith R and Zhang, Xi and Novick, Scott and others},
journal={Journal of Biological Chemistry},
volume={285},
number={7},
pages={5013--5025},
year={2010},
publisher={ASBMB}
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Marcsisin, S. R., & Engen, J. R.. (2010). Hydrogen exchange mass spectrometry: what is it and what can it tell us?. Analytical and bioanalytical chemistry, 397(3), 967–972.
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@article{marcsisin2010hydrogen,
title={Hydrogen exchange mass spectrometry: what is it and what can it tell us?},
author={Marcsisin, Sean R and Engen, John R},
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@article{zhang2010dynamics,
title={Dynamics of the β2-Adrenergic G-protein coupled receptor revealed by hydrogen- deuterium exchange},
author={Zhang, Xi and Chien, Ellen YT and Chalmers, Michael J and Pascal, Bruce D and Gatchalian, Jovylyn and Stevens, Raymond C and Griffin, Patrick R},
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Zhang, J., Chalmers, M. J., Stayrook, K. R., Burris, L. L., Garcia-Ordonez, R. D., Pascal, B. D., Burris, T. P., Dodge, J. A., & Griffin, P. R.. (2010). Hydrogen/deuterium exchange reveals distinct agonist/partial agonist receptor dynamics within vitamin d receptor/retinoid x receptor heterodimer. Structure, 18(10), 1332–1341.
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@article{zhang2010hydrogen,
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year={2009},
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title={Integrated algorithms for high-throughput examination of covalently labeled biomolecules by structural mass spectrometry},
author={Kaur, Parminder and Kiselar, Janna G and Chance, Mark R},
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number={19},
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year={2009},
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