Publications are stories, and HDX Workbench is hands down the most cited analysis software in the field, including nineteen Nature publications. Below is a list of publications that cite our software or its derivative work, so look at all of the scientific stories below and see what you can do with HDX Workbench!
- de Vera, I. M. S., Munoz-Tello, P., Zheng, J., Dharmarajan, V., Marciano, D. P., Matta-Camacho, E., Giri, P. K., Shang, J., Hughes, T. S., Rance, M., & others. (2019). Defining a canonical ligand-binding pocket in the orphan nuclear receptor nurr1. Structure, 27(1), 66–77.
[Bibtex]@article{de2019defining, title={Defining a canonical ligand-binding pocket in the orphan nuclear receptor Nurr1}, author={de Vera, Ian Mitchelle S and Munoz-Tello, Paola and Zheng, Jie and Dharmarajan, Venkatasubramanian and Marciano, David P and Matta-Camacho, Edna and Giri, Pankaj Kumar and Shang, Jinsai and Hughes, Travis S and Rance, Mark and others}, journal={Structure}, volume={27}, number={1}, pages={66--77}, year={2019}, publisher={Elsevier} } - Mosure, S., Shang, J., Eberhardt, J., Brust, R., Zheng, J., Griffin, P. R., Forli, S., & Kojetin, D. J.. (2019). Structural basis of altered potency and efficacy displayed by a major in vivo metabolite of the anti-diabetic ppar$\gamma$ drug pioglitazone. Journal of medicinal chemistry.
[Bibtex]@article{mosure2019structural, title={Structural basis of altered potency and efficacy displayed by a major in vivo metabolite of the anti-diabetic PPAR$\gamma$ drug pioglitazone}, author={Mosure, Sarah and Shang, Jinsai and Eberhardt, Jerome and Brust, Richard and Zheng, Jie and Griffin, Patrick R and Forli, Stefano and Kojetin, Douglas J}, journal={Journal of medicinal chemistry}, year={2019}, publisher={ACS Publications} } - Na, S., Lee, J., Joo, J. W. J., Lee, K., & Paek, E.. (2019). Demix: decoding deuterated distributions from heterogeneous protein states via hdx-ms. Scientific reports, 9(1), 3176.
[Bibtex]@article{na2019demix, title={deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS}, author={Na, Seungjin and Lee, Jae-Jin and Joo, Jong Wha J and Lee, Kong-Joo and Paek, Eunok}, journal={Scientific reports}, volume={9}, number={1}, pages={3176}, year={2019}, publisher={Nature Publishing Group} } - Salinas, N. D., Paing, M. M., Adhikari, J., Gross, M. L., & Tolia, N.. (2019). Moderately-neutralizing epitopes in non-functional regions dominate the antibody response to plasmodium falciparum eba-140. Infection and immunity, IAI–00716.
[Bibtex]@article{salinas2019moderately, title={Moderately-neutralizing epitopes in non-functional regions dominate the antibody response to Plasmodium falciparum EBA-140}, author={Salinas, Nichole D and Paing, May M and Adhikari, Jagat and Gross, Michael L and Tolia, Niraj}, journal={Infection and immunity}, pages={IAI--00716}, year={2019}, publisher={Am Soc Microbiol} } - Lafita, A., Bliven, S., Prlić, A., Guzenko, D., Rose, P. W., Bradley, A., Pavan, P., Myers-Turnbull, D., Valasatava, Y., Heuer, M., & others. (2019). Biojava 5: a community driven open-source bioinformatics library. Plos computational biology, 15(2), e1006791.
[Bibtex]@article{lafita2019biojava, title={BioJava 5: A community driven open-source bioinformatics library}, author={Lafita, Aleix and Bliven, Spencer and Prli{\'c}, Andreas and Guzenko, Dmytro and Rose, Peter W and Bradley, Anthony and Pavan, Paolo and Myers-Turnbull, Douglas and Valasatava, Yana and Heuer, Michael and others}, journal={PLoS computational biology}, volume={15}, number={2}, pages={e1006791}, year={2019}, publisher={Public Library of Science} } - Deyaert, E., Leemans, M., Singh, R. K., Gallardo, R., Steyaert, J., Kortholt, A., Lauer, J., & Versées, W.. (2019). Structure and nucleotide-induced conformational dynamics of the chlorobium tepidum roco protein. Biochemical journal, 476(1), 51–66.
[Bibtex]@article{deyaert2019structure, title={Structure and nucleotide-induced conformational dynamics of the Chlorobium tepidum Roco protein}, author={Deyaert, Egon and Leemans, Margaux and Singh, Ranjan Kumar and Gallardo, Rodrigo and Steyaert, Jan and Kortholt, Arjan and Lauer, Janelle and Vers{\'e}es, Wim}, journal={Biochemical Journal}, volume={476}, number={1}, pages={51--66}, year={2019}, publisher={Portland Press Limited} } - Yan, Y., Zhou, E. X., Novick, S. J., Shaw, S. J., Li, Y., Brunzelle, J. S., Hitoshi, Y., Griffin, P. R., Xu, E. H., & Melcher, K.. (2019). Structures of amp-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states. Journal of biological chemistry, 294(3), 953–967.
[Bibtex]@article{yan2019structures, title={Structures of AMP-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states}, author={Yan, Yan and Zhou, X Edward and Novick, Scott J and Shaw, Simon J and Li, Yingwu and Brunzelle, Joseph S and Hitoshi, Yasumichi and Griffin, Patrick R and Xu, H Eric and Melcher, Karsten}, journal={Journal of Biological Chemistry}, volume={294}, number={3}, pages={953--967}, year={2019}, publisher={ASBMB} } - Zhang, C., Konermann, S., Brideau, N. J., Lotfy, P., Wu, X., Novick, S. J., Strutzenberg, T., Griffin, P. R., Hsu, P. D., & Lyumkis, D.. (2018). Structural basis for the rna-guided ribonuclease activity of crispr-cas13d. Cell, 175(1), 212–223.
[Bibtex]@article{zhang2018structural, title={Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d}, author={Zhang, Cheng and Konermann, Silvana and Brideau, Nicholas J and Lotfy, Peter and Wu, Xuebing and Novick, Scott J and Strutzenberg, Timothy and Griffin, Patrick R and Hsu, Patrick D and Lyumkis, Dmitry}, journal={Cell}, volume={175}, number={1}, pages={212--223}, year={2018}, publisher={Elsevier} } - Lau, A. M., Ahdash, Z., Martens, C., & Politis, A.. (2018). Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry. Biorxiv, 417998.
[Bibtex]@article{lau2018deuteros, title={Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry}, author={Lau, Andy MC and Ahdash, Zainab and Martens, Chloe and Politis, Argyris}, journal={bioRxiv}, pages={417998}, year={2018}, publisher={Cold Spring Harbor Laboratory} } - Fassler, R., Edinger, N., Rimon, O., & Reichmann, D.. (2018). Defining hsp33’s redox-regulated chaperone activity and mapping conformational changes on hsp33 using hydrogen-deuterium exchange mass spectrometry. Jove (journal of visualized experiments)(136), e57806.
[Bibtex]@article{fassler2018defining, title={Defining Hsp33's Redox-regulated Chaperone Activity and Mapping Conformational Changes on Hsp33 Using Hydrogen-deuterium Exchange Mass Spectrometry}, author={Fassler, Rosi and Edinger, Nufar and Rimon, Oded and Reichmann, Dana}, journal={JoVE (Journal of Visualized Experiments)}, number={136}, pages={e57806}, year={2018} } - Frkic, R. L., Chua, B. S., Shin, Y., Pascal, B. D., Novick, S. J., Kamenecka, T. M., Griffin, P. R., & Bruning, J. B.. (2018). Structural and dynamic elucidation of a non-acid ppar𝛾 partial agonist: sr1988. .
[Bibtex]@article{frkic2018structural, title={Structural and Dynamic Elucidation of a Non-acid PPAR𝛾 Partial Agonist: SR1988}, author={Frkic, Rebecca L and Chua, Benjamin S and Shin, Youseung and Pascal, Bruce D and Novick, Scott J and Kamenecka, Theodore M and Griffin, Patrick R and Bruning, John B}, year={2018} } - Patil, D. N., Rangarajan, E. S., Novick, S. J., Pascal, B. D., Kojetin, D. J., Griffin, P. R., Izard, T., & Martemyanov, K. A.. (2018). Structural organization of a major neuronal g protein regulator, the rgs7-g$\beta$5-r7bp complex. Elife, 7, e42150.
[Bibtex]@article{patil2018structural, title={Structural organization of a major neuronal G protein regulator, the RGS7-G$\beta$5-R7BP complex}, author={Patil, Dipak N and Rangarajan, Erumbi S and Novick, Scott J and Pascal, Bruce D and Kojetin, Douglas J and Griffin, Patrick R and Izard, Tina and Martemyanov, Kirill A}, journal={eLife}, volume={7}, pages={e42150}, year={2018}, publisher={eLife Sciences Publications Limited} } - Sanulli, S., Trnka, M. J., Dharmarajan, V., Tibble, R. W., Pascal, B. D., Burlingame, A. L., Griffin, P. R., Gross, J. D., & Narlikar, G. J.. (2018). Disorganization of the histone core promotes organization of heterochromatin into phase-separated droplets. Biorxiv, 473132.
[Bibtex]@article{sanulli2018disorganization, title={Disorganization of the histone core promotes organization of heterochromatin into phase-separated droplets}, author={Sanulli, Serena and Trnka, Mike J and Dharmarajan, Venkat and Tibble, Ryan W and Pascal, Bruce D and Burlingame, Alma L and Griffin, Patrick R and Gross, John D and Narlikar, Geeta J}, journal={bioRxiv}, pages={473132}, year={2018}, publisher={Cold Spring Harbor Laboratory} } - Robin, A. Y., Iyer, S., Birkinshaw, R. W., Sandow, J., Wardak, A., Luo, C. S., Shi, M., Webb, A. I., Czabotar, P. E., Kluck, R. M., & others. (2018). Ensemble properties of bax determine its function. Structure, 26(10), 1346–1359.
[Bibtex]@article{robin2018ensemble, title={Ensemble Properties of Bax Determine Its Function}, author={Robin, Adeline Y and Iyer, Sweta and Birkinshaw, Richard W and Sandow, Jarrod and Wardak, Ahmad and Luo, Cindy S and Shi, Melissa and Webb, Andrew I and Czabotar, Peter E and Kluck, Ruth M and others}, journal={Structure}, volume={26}, number={10}, pages={1346--1359}, year={2018}, publisher={Elsevier} } - Háda, V., Bagdi, A., Bihari, Z., Timári, S. B., Fizil, Ádám., & Szántay Jr, C.. (2018). Recent advancements, challenges, and practical considerations in the mass spectrometry-based analytics of protein biotherapeutics: a viewpoint from the biosimilar industry. Journal of pharmaceutical and biomedical analysis.
[Bibtex]@article{hada2018recent, title={Recent advancements, challenges, and practical considerations in the mass spectrometry-based analytics of protein biotherapeutics: A viewpoint from the biosimilar industry}, author={H{\'a}da, Viktor and Bagdi, Attila and Bihari, Zsolt and Tim{\'a}ri, Sarolta Bagin{\'e} and Fizil, {\'A}d{\'a}m and Sz{\'a}ntay Jr, Csaba}, journal={Journal of pharmaceutical and biomedical analysis}, year={2018}, publisher={Elsevier} } - Woodcock, J. M., Goodwin, K. L., Sandow, J. J., Coolen, C., Perugini, M. A., Webb, A. I., Pitson, S. M., Lopez, A. F., & Carver, J. A.. (2018). Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, n-terminal $\alpha$-helical order, and molecular chaperone activity. Journal of biological chemistry, 293(1), 89–99.
[Bibtex]@article{woodcock2018role, title={Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, N-terminal $\alpha$-helical order, and molecular chaperone activity}, author={Woodcock, Joanna M and Goodwin, Katy L and Sandow, Jarrod J and Coolen, Carl and Perugini, Matthew A and Webb, Andrew I and Pitson, Stuart M and Lopez, Angel F and Carver, John A}, journal={Journal of Biological Chemistry}, volume={293}, number={1}, pages={89--99}, year={2018}, publisher={ASBMB} } - Kim, H., Wrann, C. D., Jedrychowski, M., Vidoni, S., Kitase, Y., Nagano, K., Zhou, C., Chou, J., Parkman, V. A., Novick, S. J., & others. (2018). Irisin mediates effects on bone and fat via $\alpha$v integrin receptors. Cell, 175(7), 1756–1768.
[Bibtex]@article{kim2018irisin, title={Irisin Mediates Effects on Bone and Fat via $\alpha$V Integrin Receptors}, author={Kim, Hyeonwoo and Wrann, Christiane D and Jedrychowski, Mark and Vidoni, Sara and Kitase, Yukiko and Nagano, Kenichi and Zhou, Chenhe and Chou, Joshua and Parkman, Virginia-Jeni A and Novick, Scott J and others}, journal={Cell}, volume={175}, number={7}, pages={1756--1768}, year={2018}, publisher={Elsevier} } - Hung, P. J., Johnson, B., Chen, B., Byrum, A. K., Bredemeyer, A. L., Yewdell, W. T., Johnson, T. E., Lee, B. J., Deivasigamani, S., Hindi, I., & others. (2018). Mri is a dna damage response adaptor during classical non-homologous end joining. Molecular cell, 71(2), 332–342.
[Bibtex]@article{hung2018mri, title={MRI is a DNA damage response adaptor during classical non-homologous end joining}, author={Hung, Putzer J and Johnson, Britney and Chen, Bo-Ruei and Byrum, Andrea K and Bredemeyer, Andrea L and Yewdell, William T and Johnson, Tanya E and Lee, Brian J and Deivasigamani, Shruthi and Hindi, Issa and others}, journal={Molecular cell}, volume={71}, number={2}, pages={332--342}, year={2018}, publisher={Elsevier} } - Zheng, J., Corzo, C., Chang, M. R., Shang, J., Lam, V. Q., Brust, R., Blayo, A., Bruning, J. B., Kamenecka, T. M., Kojetin, D. J., & others. (2018). Chemical crosslinking mass spectrometry reveals the conformational landscape of the activation helix of ppar$\gamma$; a model for ligand-dependent antagonism. Structure, 26(11), 1431–1439.
[Bibtex]@article{zheng2018chemical, title={Chemical crosslinking mass spectrometry reveals the conformational landscape of the activation helix of PPAR$\gamma$; a model for ligand-dependent antagonism}, author={Zheng, Jie and Corzo, Cesar and Chang, Mi Ra and Shang, Jinsai and Lam, Vinh Q and Brust, Richard and Blayo, Anne-Laure and Bruning, John B and Kamenecka, Theodore M and Kojetin, Douglas J and others}, journal={Structure}, volume={26}, number={11}, pages={1431--1439}, year={2018}, publisher={Elsevier} } - Fernandez, E., Kose, N., Edeling, M. A., Adhikari, J., Sapparapu, G., Lazarte, S. M., Nelson, C. A., Govero, J., Gross, M. L., Fremont, D. H., & others. (2018). Mouse and human monoclonal antibodies protect against infection by multiple genotypes of japanese encephalitis virus. Mbio, 9(1), e00008–18.
[Bibtex]@article{fernandez2018mouse, title={Mouse and human monoclonal antibodies protect against infection by multiple genotypes of japanese encephalitis virus}, author={Fernandez, Estefania and Kose, Nurgun and Edeling, Melissa A and Adhikari, Jagat and Sapparapu, Gopal and Lazarte, Susana M and Nelson, Christopher A and Govero, Jennifer and Gross, Michael L and Fremont, Daved H and others}, journal={MBio}, volume={9}, number={1}, pages={e00008--18}, year={2018}, publisher={Am Soc Microbiol} } - Bandyopadhyay, A., Van Eps, N., Eger, B. T., Rauscher, S., Yedidi, R. S., Moroni, T., West, G. M., Robinson, K. A., Griffin, P. R., Mitchell, J., & others. (2018). A novel polar core and weakly fixed c-tail in squid arrestin provide new insight into interaction with rhodopsin. Journal of molecular biology, 430(21), 4102–4118.
[Bibtex]@article{bandyopadhyay2018novel, title={A Novel Polar Core and Weakly Fixed C-Tail in Squid Arrestin Provide New Insight into Interaction with Rhodopsin}, author={Bandyopadhyay, Abhishek and Van Eps, Ned and Eger, Bryan T and Rauscher, Sarah and Yedidi, Ravikiran S and Moroni, Tina and West, Graham M and Robinson, Kelly Ann and Griffin, Patrick R and Mitchell, Jane and others}, journal={Journal of molecular biology}, volume={430}, number={21}, pages={4102--4118}, year={2018}, publisher={Elsevier} } - Offenbacher, A. R., Iavarone, A. T., & Klinman, J. P.. (2018). Hydrogen–deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase. Journal of biological chemistry, 293(4), 1138–1148.
[Bibtex]@article{offenbacher2018hydrogen, title={Hydrogen--deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase}, author={Offenbacher, Adam R and Iavarone, Anthony T and Klinman, Judith P}, journal={Journal of Biological Chemistry}, volume={293}, number={4}, pages={1138--1148}, year={2018}, publisher={ASBMB} } - Offenbacher, A. R., Iavarone, A. T., & Klinman, J. P.. (2018). Hydrogen–deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase. Journal of biological chemistry, 293(4), 1138–1148.
[Bibtex]@article{offenbacher2018hydrogen, title={Hydrogen--deuterium exchange reveals long-range dynamical allostery in soybean lipoxygenase}, author={Offenbacher, Adam R and Iavarone, Anthony T and Klinman, Judith P}, journal={Journal of Biological Chemistry}, volume={293}, number={4}, pages={1138--1148}, year={2018}, publisher={ASBMB} } - Fernandez, E., Kose, N., Edeling, M. A., Adhikari, J., Sapparapu, G., Lazarte, S. M., Nelson, C. A., Govero, J., Gross, M. L., Fremont, D. H., & others. (2018). Mouse and human monoclonal antibodies protect against infection by multiple genotypes of japanese encephalitis virus. Mbio, 9(1), e00008–18.
[Bibtex]@article{fernandez2018mouse, title={Mouse and Human Monoclonal Antibodies Protect against Infection by Multiple Genotypes of Japanese Encephalitis Virus}, author={Fernandez, Estefania and Kose, Nurgun and Edeling, Melissa A and Adhikari, Jagat and Sapparapu, Gopal and Lazarte, Susana M and Nelson, Christopher A and Govero, Jennifer and Gross, Michael L and Fremont, Daved H and others}, journal={mBio}, volume={9}, number={1}, pages={e00008--18}, year={2018}, publisher={Am Soc Microbiol} } - Woodcock, J. M., Goodwin, K. L., Sandow, J. J., Coolen, C., Perugini, M. A., Webb, A. I., Pitson, S. M., Lopez, A. F., & Carver, J. A.. (2018). Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, n-terminal $\alpha$-helical order, and molecular chaperone activity. Journal of biological chemistry, 293(1), 89–99.
[Bibtex]@article{woodcock2018role, title={Role of salt bridges in the dimer interface of 14-3-3$\zeta$ in dimer dynamics, N-terminal $\alpha$-helical order, and molecular chaperone activity}, author={Woodcock, Joanna M and Goodwin, Katy L and Sandow, Jarrod J and Coolen, Carl and Perugini, Matthew A and Webb, Andrew I and Pitson, Stuart M and Lopez, Angel F and Carver, John A}, journal={Journal of Biological Chemistry}, volume={293}, number={1}, pages={89--99}, year={2018}, publisher={ASBMB} } - Johnson, B., VanBlargan, L. A., Xu, W., White, J. P., Shan, C., Shi, P., Zhang, R., Adhikari, J., Gross, M. L., Leung, D. W., & others. (2018). Human ifit3 modulates ifit1 rna binding specificity and protein stability. Immunity, 48(3), 487–499.
[Bibtex]@article{johnson2018human, title={Human IFIT3 modulates IFIT1 RNA binding specificity and protein stability}, author={Johnson, Britney and VanBlargan, Laura A and Xu, Wei and White, James P and Shan, Chao and Shi, Pei-Yong and Zhang, Rong and Adhikari, Jagat and Gross, Michael L and Leung, Daisy W and others}, journal={Immunity}, volume={48}, number={3}, pages={487--499}, year={2018}, publisher={Elsevier} } - Arun, A., Narayanan, S., Sarangi, S., & Mandal, A. K.. (2018). Analysis of isotopic peaks in hydrogen/deuterium exchange mass spectra for precise measurement of isotope average centroid mass of peptides and proteins using r programming language. .
[Bibtex]@article{arun2018analysis, title={Analysis of Isotopic Peaks in Hydrogen/Deuterium Exchange Mass Spectra for Precise Measurement of Isotope Average Centroid Mass of Peptides and Proteins Using R Programming Language}, author={Arun, Arumugaperumal and Narayanan, Sreekala and Sarangi, Subhasis and Mandal, Amit Kumar}, year={2018} } - Zheng, J., Wang, C., Chang, M. R., Devarkar, S. C., Schweibenz, B., Crynen, G. C., Garcia-Ordonez, R. D., Pascal, B. D., Novick, S. J., Patel, S. S., & others. (2018). Hdx-ms reveals dysregulated checkpoints that compromise discrimination against self rna during rig-i mediated autoimmunity. Nature communications, 9(1), 5366.
[Bibtex]@article{zheng2018hdx, title={HDX-MS reveals dysregulated checkpoints that compromise discrimination against self RNA during RIG-I mediated autoimmunity}, author={Zheng, Jie and Wang, Chen and Chang, Mi Ra and Devarkar, Swapnil C and Schweibenz, Brandon and Crynen, Gogce C and Garcia-Ordonez, Ruben D and Pascal, Bruce D and Novick, Scott J and Patel, Smita S and others}, journal={Nature communications}, volume={9}, number={1}, pages={5366}, year={2018}, publisher={Nature Publishing Group} } - Hamuro, Y., & Coales, S. J.. (2018). Optimization of feasibility stage for hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 1–7.
[Bibtex]@article{hamuro2018optimization, title={Optimization of Feasibility Stage for Hydrogen/Deuterium Exchange Mass Spectrometry}, author={Hamuro, Yoshitomo and Coales, Stephen J}, journal={Journal of The American Society for Mass Spectrometry}, pages={1--7}, year={2018}, publisher={Springer} } - Chinthalapudi, K., Mandati, V., Zheng, J., Sharff, A. J., Bricogne, G., Griffin, P. R., Kissil, J., & Izard, T.. (2018). Lipid binding promotes the open conformation and tumor-suppressive activity of neurofibromin 2. Nature communications, 9(1), 1338.
[Bibtex]@article{chinthalapudi2018lipid, title={Lipid binding promotes the open conformation and tumor-suppressive activity of neurofibromin 2}, author={Chinthalapudi, Krishna and Mandati, Vinay and Zheng, Jie and Sharff, Andrew J and Bricogne, Gerard and Griffin, Patrick R and Kissil, Joseph and Izard, Tina}, journal={Nature communications}, volume={9}, number={1}, pages={1338}, year={2018}, publisher={Nature Publishing Group} } - Petrie, E., Sandow, J., Jacobsen, A., Smith, B., Griffin, M., Lucet, I., Dai, W., Young, S., Tanzer, M., Wardak, A., & others. (2018). Conformational switching of the pseudokinase domain promotes human mlkl tetramerization and cell death by necroptosis.. Nature communications, 9(1), 2422–2422.
[Bibtex]@article{petrie2018conformational, title={Conformational switching of the pseudokinase domain promotes human MLKL tetramerization and cell death by necroptosis.}, author={Petrie, EJ and Sandow, JJ and Jacobsen, AV and Smith, BJ and Griffin, MDW and Lucet, IS and Dai, W and Young, SN and Tanzer, MC and Wardak, A and others}, journal={Nature communications}, volume={9}, number={1}, pages={2422--2422}, year={2018} } - Johnson, B., McConnell, P., Kozlov, A. G., Mekel, M., Lohman, T. M., Gross, M. L., Amarasinghe, G. K., & Cooper, J. A.. (2018). Allosteric coupling of carmil and v-1 binding to capping protein revealed by hydrogen-deuterium exchange. Cell reports, 23(9), 2795–2804.
[Bibtex]@article{johnson2018allosteric, title={Allosteric Coupling of CARMIL and V-1 Binding to Capping Protein Revealed by Hydrogen-Deuterium Exchange}, author={Johnson, Britney and McConnell, Patrick and Kozlov, Alex G and Mekel, Marlene and Lohman, Timothy M and Gross, Michael L and Amarasinghe, Gaya K and Cooper, John A}, journal={Cell reports}, volume={23}, number={9}, pages={2795--2804}, year={2018}, publisher={Elsevier} } - Xiao, K., Zhao, Y., Choi, M., Liu, H., Blanc, A., Qian, J., Cahill III, T. J., Li, X., Xiao, Y., Clark, L. J., & others. (2018). Revealing the architecture of protein complexes by an orthogonal approach combining hdxms, cxms, and disulfide trapping. Nature protocols, 13(6), 1403.
[Bibtex]@article{xiao2018revealing, title={Revealing the architecture of protein complexes by an orthogonal approach combining HDXMS, CXMS, and disulfide trapping}, author={Xiao, Kunhong and Zhao, Yang and Choi, Minjung and Liu, Hongda and Blanc, Adi and Qian, Jiang and Cahill III, Thomas J and Li, Xue and Xiao, Yunfang and Clark, Lisa J and others}, journal={Nature protocols}, volume={13}, number={6}, pages={1403}, year={2018}, publisher={Nature Publishing Group} } - Birch, J., Axford, D., Foadi, J., Meyer, A., Eckardt, A., Thielmann, Y., & Moraes, I.. (2018). The fine art of integral membrane protein crystallisation. Methods.
[Bibtex]@article{birch2018fine, title={The fine art of integral membrane protein crystallisation}, author={Birch, James and Axford, Danny and Foadi, James and Meyer, Arne and Eckardt, Annette and Thielmann, Yvonne and Moraes, Isabel}, journal={Methods}, year={2018}, publisher={Elsevier} } - Johnson, B., VanBlargan, L. A., Xu, W., White, J. P., Shan, C., Shi, P., Zhang, R., Adhikari, J., Gross, M. L., Leung, D. W., & others. (2018). Binding of ifit1 by ifit3 modulates protein stability and rna binding specificity. Immunity, 48(3), 487.
[Bibtex]@article{johnson2018binding, title={Binding of IFIT1 by IFIT3 modulates protein stability and RNA binding specificity}, author={Johnson, Britney and VanBlargan, Laura A and Xu, Wei and White, James P and Shan, Chao and Shi, Pei-Yong and Zhang, Rong and Adhikari, Jagat and Gross, Michael L and Leung, Daisy W and others}, journal={Immunity}, volume={48}, number={3}, pages={487}, year={2018}, publisher={NIH Public Access} } - Oganesyan, I., Lento, C., & Wilson, D. J.. (2018). Contemporary hydrogen deuterium exchange mass spectrometry. Methods.
[Bibtex]@article{oganesyan2018contemporary, title={Contemporary Hydrogen Deuterium Exchange Mass Spectrometry}, author={Oganesyan, Irina and Lento, Cristina and Wilson, Derek J}, journal={Methods}, year={2018}, publisher={Elsevier} } - Fanning, S. W., Jeselsohn, R., Dharmarajan, V., Mayne, C. G., Karimi, M., Buchwalter, G., Houtman, R., Toy, W., Fowler, C. E., Laine, M., & others. (2018). The serm/serd bazedoxifene disrupts esr1 helix 12 to overcome acquired hormone resistance in breast cancer cells. Biorxiv, 306472.
[Bibtex]@article{fanning2018serm, title={The SERM/SERD Bazedoxifene Disrupts ESR1 Helix 12 to Overcome Acquired Hormone Resistance in Breast Cancer Cells}, author={Fanning, Sean W and Jeselsohn, Rinath and Dharmarajan, Venkatasubramanian and Mayne, Christopher G and Karimi, Mostafa and Buchwalter, Gilles and Houtman, Ren{\'e} and Toy, Weiyi and Fowler, Colin E and Laine, Muriel and others}, journal={bioRxiv}, pages={306472}, year={2018}, publisher={Cold Spring Harbor Laboratory} } - Goswami, D., Zhang, J., Bondarenko, P. V., & Zhang, Z.. (2018). Ms-based conformation analysis of recombinant proteins in design, optimization and development of biopharmaceuticals. Methods.
[Bibtex]@article{goswami2018ms, title={MS-based conformation analysis of recombinant proteins in design, optimization and development of biopharmaceuticals}, author={Goswami, Devrishi and Zhang, Jun and Bondarenko, Pavel V and Zhang, Zhongqi}, journal={Methods}, year={2018}, publisher={Elsevier} } - Huang, R. Y-C., O’Neil, S. R., Lipovšek, D., & Chen, G.. (2018). Conformational assessment of adnectin and adnectin-drug conjugate by hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 1–8.
[Bibtex]@article{huang2018conformational, title={Conformational Assessment of Adnectin and Adnectin-Drug Conjugate by Hydrogen/Deuterium Exchange Mass Spectrometry}, author={Huang, Richard Y-C and O’Neil, Steven R and Lipov{\v{s}}ek, Da{\v{s}}a and Chen, Guodong}, journal={Journal of The American Society for Mass Spectrometry}, pages={1--8}, year={2018}, publisher={Springer} } - Cherian, M. T., Chai, S. C., Wright, W. C., Singh, A., Casal, M. A., Zheng, J., Wu, J., Lee, R. E., Griffin, P. R., & Chen, T.. (2018). Cinpa1 binds directly to constitutive androstane receptor and inhibits its activity. Biochemical pharmacology, 152, 211–223.
[Bibtex]@article{cherian2018cinpa1, title={CINPA1 binds directly to constitutive androstane receptor and inhibits its activity}, author={Cherian, Milu T and Chai, Sergio C and Wright, William C and Singh, Aman and Casal, Morgan Alexandra and Zheng, Jie and Wu, Jing and Lee, Richard E and Griffin, Patrick R and Chen, Taosheng}, journal={Biochemical pharmacology}, volume={152}, pages={211--223}, year={2018}, publisher={Elsevier} } - Evans, P. R., Gerber, K. J., Dammer, E. B., Duong, D. M., Goswami, D., Lustberg, D. J., Zou, J., Yang, J. J., Dudek, S. M., Griffin, P. R., & others. (2018). Interactome analysis reveals regulator of g protein signaling 14 (rgs14) is a novel calcium/calmodulin (ca2+/cam) and cam kinase ii (camkii) binding partner. Journal of proteome research, 17(4), 1700–1711.
[Bibtex]@article{evans2018interactome, title={Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca2+/CaM) and CaM Kinase II (CaMKII) Binding Partner}, author={Evans, Paul R and Gerber, Kyle J and Dammer, Eric B and Duong, Duc M and Goswami, Devrishi and Lustberg, Daniel J and Zou, Juan and Yang, Jenny J and Dudek, Serena M and Griffin, Patrick R and others}, journal={Journal of proteome research}, volume={17}, number={4}, pages={1700--1711}, year={2018}, publisher={ACS Publications} } - de Vera, I. M. S., Munoz-Tello, P., Dharmarajan, V., Marciano, D. P., Matta-Camacho, E., Giri, P. K., Shang, J., Hughes, T. S., Rance, M., Griffin, P. R., & others. (2018). Defining a canonical ligand-binding pocket in the orphan nuclear receptor nurr1. Biorxiv, 278440.
[Bibtex]@article{de2018defining, title={Defining a canonical ligand-binding pocket in the orphan nuclear receptor Nurr1}, author={de Vera, Ian Mitchelle S and Munoz-Tello, Paola and Dharmarajan, Venkatasubramanian and Marciano, David P and Matta-Camacho, Edna and Giri, Pankaj Kumar and Shang, Jinsai and Hughes, Travis S and Rance, Mark and Griffin, Patrick R and others}, journal={bioRxiv}, pages={278440}, year={2018}, publisher={Cold Spring Harbor Laboratory} } - Kurumbail, R. G., West, G. M., Dharmarajan, V., Borzilleri, K. A., Withka, J. M., Ward, J., Reyes, A. R., Rajamohan, F., Griffin, P. R., & Calabrese, M. F.. (2018). Biophysical interactions of direct ampk activators. In Ampk (pp. 29–55). Springer.
[Bibtex]@incollection{kurumbail2018biophysical, title={Biophysical Interactions of Direct AMPK Activators}, author={Kurumbail, Ravi G and West, Graham M and Dharmarajan, Venkatasubramanian and Borzilleri, Kris A and Withka, Jane M and Ward, Jessica and Reyes, Allan R and Rajamohan, Francis and Griffin, Patrick R and Calabrese, Matthew F}, booktitle={AMPK}, pages={29--55}, year={2018}, publisher={Springer} } - Guo, Y., Iavarone, A. T., Cooper, M. M., & Marletta, M. A.. (2018). Mapping the h-nox/hk binding interface in vibrio cholerae by hydrogen/deuterium exchange mass spectrometry. Biochemistry, 57(11), 1779–1789.
[Bibtex]@article{guo2018mapping, title={Mapping the H-NOX/HK binding interface in Vibrio cholerae by hydrogen/deuterium exchange mass spectrometry}, author={Guo, Yirui and Iavarone, Anthony T and Cooper, Matthew M and Marletta, Michael A}, journal={Biochemistry}, volume={57}, number={11}, pages={1779--1789}, year={2018}, publisher={ACS Publications} } - Hanson, Q. M., Carley, J. R., Gilbreath, T. J., Smith, B. C., & Underbakke, E. S.. (2018). Calmodulin-induced conformational control and allostery underlying neuronal nitric oxide synthase activation. Journal of molecular biology, 430(7), 935–947.
[Bibtex]@article{hanson2018calmodulin, title={Calmodulin-induced Conformational Control and Allostery Underlying Neuronal Nitric Oxide Synthase Activation}, author={Hanson, Quinlin M and Carley, Jeffrey R and Gilbreath, Tyler J and Smith, Brian C and Underbakke, Eric S}, journal={Journal of molecular biology}, volume={430}, number={7}, pages={935--947}, year={2018}, publisher={Elsevier} } - Tyukhtenko, S., Rajarshi, G., Karageorgos, I., Zvonok, N., Gallagher, E. S., Huang, H., Vemuri, K., Hudgens, J. W., Ma, X., Nasr, M. L., & others. (2018). Effects of distal mutations on the structure, dynamics and catalysis of human monoacylglycerol lipase. Scientific reports, 8(1), 1719.
[Bibtex]@article{tyukhtenko2018effects, title={Effects of Distal Mutations on the Structure, Dynamics and Catalysis of Human Monoacylglycerol Lipase}, author={Tyukhtenko, Sergiy and Rajarshi, Girija and Karageorgos, Ioannis and Zvonok, Nikolai and Gallagher, Elyssia S and Huang, Hongwei and Vemuri, Kiran and Hudgens, Jeffrey W and Ma, Xiaoyu and Nasr, Mahmoud L and others}, journal={Scientific reports}, volume={8}, number={1}, pages={1719}, year={2018}, publisher={Nature Publishing Group} } - Evans, P. R., Gerber, K. J., Dammer, E. B., Duong, D. M., Goswami, D., Lustberg, D. J., Zou, J., Yang, J. J., Dudek, S. M., Griffin, P. R., & others. (2018). Interactome analysis reveals regulator of g protein signaling 14 (rgs14) is a novel calmodulin (cam) effector in mouse brain. Biorxiv, 247270.
[Bibtex]@article{evans2018interactome, title={Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calmodulin (CaM) Effector in Mouse Brain}, author={Evans, Paul R and Gerber, Kyle J and Dammer, Eric B and Duong, Duc M and Goswami, Devrishi and Lustberg, Daniel J and Zou, Juan and Yang, Jenny J and Dudek, Serena M and Griffin, Patrick R and others}, journal={bioRxiv}, pages={247270}, year={2018}, publisher={Cold Spring Harbor Laboratory} } - Xu, G., Stupak, J., Yang, L., Hu, L., Guo, B., & Li, J.. (2018). Deconvolution in mass spectrometry-based proteomics. Rapid communications in mass spectrometry.
[Bibtex]@article{xu2018deconvolution, title={Deconvolution in mass spectrometry-based proteomics}, author={Xu, Guang and Stupak, Jacek and Yang, Li and Hu, Luokai and Guo, Bo and Li, Jianjun}, journal={Rapid Communications in Mass Spectrometry}, year={2018}, publisher={Wiley Online Library} } - Cryar, A., Groves, K., & Quaglia, M.. (2017). Online hydrogen-deuterium exchange traveling wave ion mobility mass spectrometry (hdx-im-ms): a systematic evaluation. Journal of the american society for mass spectrometry, 28(6), 1192–1202.
[Bibtex]@article{cryar2017online, title={Online Hydrogen-Deuterium Exchange Traveling Wave Ion Mobility Mass Spectrometry (HDX-IM-MS): a Systematic Evaluation}, author={Cryar, Adam and Groves, Kate and Quaglia, Milena}, journal={Journal of The American Society for Mass Spectrometry}, volume={28}, number={6}, pages={1192--1202}, year={2017}, publisher={Springer} } - Huang, R. Y-C., Iacob, R. E., Krystek, S. R., Jin, M., Wei, H., Tao, L., Das, T. K., Tymiak, A. A., Engen, J. R., & Chen, G.. (2017). Characterization of aggregation propensity of a human fc-fusion protein therapeutic by hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 28(5), 795–802.
[Bibtex]@article{huang2017characterization, title={Characterization of aggregation propensity of a human Fc-fusion protein therapeutic by hydrogen/deuterium exchange mass spectrometry}, author={Huang, Richard Y-C and Iacob, Roxana E and Krystek, Stanley R and Jin, Mi and Wei, Hui and Tao, Li and Das, Tapan K and Tymiak, Adrienne A and Engen, John R and Chen, Guodong}, journal={Journal of The American Society for Mass Spectrometry}, volume={28}, number={5}, pages={795--802}, year={2017}, publisher={Springer} } - Claesen, J., & Burzykowski, T.. (2017). Computational methods and challenges in hydrogen/deuterium exchange mass spectrometry. Mass spectrometry reviews, 36(5), 649–667.
[Bibtex]@article{claesen2017computational, title={Computational methods and challenges in hydrogen/deuterium exchange mass spectrometry}, author={Claesen, J{\"u}rgen and Burzykowski, Tomasz}, journal={Mass spectrometry reviews}, volume={36}, number={5}, pages={649--667}, year={2017}, publisher={Wiley Online Library} } - Hamuro, Y.. (2017). Determination of equine cytochrome c backbone amide hydrogen/deuterium exchange rates by mass spectrometry using a wider time window and isotope envelope. Journal of the american society for mass spectrometry, 28(3), 486–497.
[Bibtex]@article{hamuro2017determination, title={Determination of equine Cytochrome c backbone amide hydrogen/deuterium exchange rates by mass spectrometry using a wider time window and isotope envelope}, author={Hamuro, Yoshitomo}, journal={Journal of The American Society for Mass Spectrometry}, volume={28}, number={3}, pages={486--497}, year={2017}, publisher={Springer} } - Brown, K. A., & Wilson, D. J.. (2017). Bottom-up hydrogen deuterium exchange mass spectrometry: data analysis and interpretation. Analyst, 142(16), 2874–2886.
[Bibtex]@article{brown2017bottom, title={Bottom-up hydrogen deuterium exchange mass spectrometry: data analysis and interpretation}, author={Brown, Kerene A and Wilson, Derek J}, journal={Analyst}, volume={142}, number={16}, pages={2874--2886}, year={2017}, publisher={Royal Society of Chemistry} } - Zhang, X., Zhao, F., Wu, Y., Yang, J., Han, G. W., Zhao, S., Ishchenko, A., Ye, L., Lin, X., Ding, K., & others. (2017). Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand. Nature communications, 8, 15383.
[Bibtex]@article{zhang2017crystal, title={Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand}, author={Zhang, Xianjun and Zhao, Fei and Wu, Yiran and Yang, Jun and Han, Gye Won and Zhao, Suwen and Ishchenko, Andrii and Ye, Lintao and Lin, Xi and Ding, Kang and others}, journal={Nature Communications}, volume={8}, pages={15383}, year={2017}, publisher={Nature Publishing Group} } - Masson, G. R., Jenkins, M. L., & Burke, J. E.. (2017). An overview of hydrogen deuterium exchange mass spectrometry (hdx-ms) in drug discovery. Expert opinion on drug discovery, 12(10), 981–994.
[Bibtex]@article{masson2017overview, title={An overview of hydrogen deuterium exchange mass spectrometry (HDX-MS) in drug discovery}, author={Masson, Glenn R and Jenkins, Meredith L and Burke, John E}, journal={Expert opinion on drug discovery}, volume={12}, number={10}, pages={981--994}, year={2017}, publisher={Taylor \& Francis} } - Yang, L., Adhikari, J., Gross, M. L., & Li, L.. (2017). Kinetic isotope effects and hydrogen/deuterium exchange reveal large conformational changes during the catalysis of the clostridium acetobutylicum spore photoproduct lyase. Photochemistry and photobiology, 93(1), 331–342.
[Bibtex]@article{yang2017kinetic, title={Kinetic isotope effects and hydrogen/deuterium exchange reveal large conformational changes during the catalysis of the Clostridium acetobutylicum spore photoproduct lyase}, author={Yang, Linlin and Adhikari, Jagat and Gross, Michael L and Li, Lei}, journal={Photochemistry and photobiology}, volume={93}, number={1}, pages={331--342}, year={2017}, publisher={Wiley Online Library} } - Mays, S. G., Okafor, D. C., Tuntland, M. L., Whitby, R. J., Dharmarajan, V., Stec, J., Griffin, P. R., & Ortlund, E. A.. (2017). Structure and dynamics of the liver receptor homolog 1–pgc1$\alpha$ complex. Molecular pharmacology, 92(1), 1–11.
[Bibtex]@article{mays2017structure, title={Structure and Dynamics of the Liver Receptor Homolog 1--PGC1$\alpha$ Complex}, author={Mays, Suzanne G and Okafor, C Denise and Tuntland, Micheal L and Whitby, Richard J and Dharmarajan, Venkatasubramanian and Stec, J{\'o}zef and Griffin, Patrick R and Ortlund, Eric A}, journal={Molecular pharmacology}, volume={92}, number={1}, pages={1--11}, year={2017}, publisher={ASPET} } - Mazur, S. J., Gallagher, E. S., Debnath, S., Durell, S. R., Anderson, K. W., Miller Jenkins, L. M., Appella, E., & Hudgens, J. W.. (2017). Conformational changes in active and inactive states of human pp2c$\alpha$ characterized by hydrogen/deuterium exchange–mass spectrometry. Biochemistry, 56(21), 2676–2689.
[Bibtex]@article{mazur2017conformational, title={Conformational Changes in Active and Inactive States of Human PP2C$\alpha$ Characterized by Hydrogen/Deuterium Exchange--Mass Spectrometry}, author={Mazur, Sharlyn J and Gallagher, Elyssia S and Debnath, Subrata and Durell, Stewart R and Anderson, Kyle W and Miller Jenkins, Lisa M and Appella, Ettore and Hudgens, Jeffrey W}, journal={Biochemistry}, volume={56}, number={21}, pages={2676--2689}, year={2017}, publisher={ACS Publications} } - Pal, K., Bandyopadhyay, A., Zhou, E. X., Xu, Q., Marciano, D. P., Brunzelle, J. S., Yerrum, S., Griffin, P. R., Woude, G. V., Melcher, K., & others. (2017). Structural basis of tpr-mediated oligomerization and activation of oncogenic fusion kinases. Structure, 25(6), 867–877.
[Bibtex]@article{pal2017structural, title={Structural Basis of TPR-Mediated Oligomerization and Activation of Oncogenic Fusion Kinases}, author={Pal, Kuntal and Bandyopadhyay, Abhishek and Zhou, X Edward and Xu, Qingping and Marciano, David P and Brunzelle, Joseph S and Yerrum, Smitha and Griffin, Patrick R and Woude, George Vande and Melcher, Karsten and others}, journal={Structure}, volume={25}, number={6}, pages={867--877}, year={2017}, publisher={Elsevier} } - Wang, L., & Chance, M. R.. (2017). Protein footprinting comes of age: mass spectrometry for biophysical structure assessment. Molecular & cellular proteomics, 16(5), 706–716.
[Bibtex]@article{wang2017protein, title={Protein footprinting comes of age: mass spectrometry for biophysical structure assessment}, author={Wang, Liwen and Chance, Mark R}, journal={Molecular \& Cellular Proteomics}, volume={16}, number={5}, pages={706--716}, year={2017}, publisher={ASBMB} } - Zhang, J., Li, J., Craig, T. A., Kumar, R., & Gross, M. L.. (2017). Hydrogen–deuterium exchange mass spectrometry reveals calcium binding properties and allosteric regulation of downstream regulatory element antagonist modulator (dream). Biochemistry, 56(28), 3523–3530.
[Bibtex]@article{zhang2017hydrogen, title={Hydrogen--Deuterium Exchange Mass Spectrometry Reveals Calcium Binding Properties and Allosteric Regulation of Downstream Regulatory Element Antagonist Modulator (DREAM)}, author={Zhang, Jun and Li, Jing and Craig, Theodore A and Kumar, Rajiv and Gross, Michael L}, journal={Biochemistry}, volume={56}, number={28}, pages={3523--3530}, year={2017}, publisher={ACS Publications} } - Srinivasan, S., Nwachukwu, J. C., Bruno, N. E., Dharmarajan, V., Goswami, D., Kastrati, I., Novick, S., Nowak, J., Cavett, V., Zhou, H., & others. (2017). Full antagonism of the estrogen receptor without a prototypical ligand side chain. Nature chemical biology, 13(1), 111–118.
[Bibtex]@article{srinivasan2017full, title={Full antagonism of the estrogen receptor without a prototypical ligand side chain}, author={Srinivasan, Sathish and Nwachukwu, Jerome C and Bruno, Nelson E and Dharmarajan, Venkatasubramanian and Goswami, Devrishi and Kastrati, Irida and Novick, Scott and Nowak, Jason and Cavett, Valerie and Zhou, Hai-Bing and others}, journal={Nature chemical biology}, volume={13}, number={1}, pages={111--118}, year={2017}, publisher={Nature Research} } - Lin, W., Wang, Y., Chai, S. C., Lv, L., Zheng, J., Wu, J., Zhang, Q., Wang, Y., Griffin, P. R., & Chen, T.. (2017). Spa70 is a potent antagonist of human pregnane x receptor. Nature communications, 8(1), 741.
[Bibtex]@article{lin2017spa70, title={SPA70 is a potent antagonist of human pregnane X receptor}, author={Lin, Wenwei and Wang, Yue-Ming and Chai, Sergio C and Lv, Lili and Zheng, Jie and Wu, Jing and Zhang, Qijun and Wang, Yong-Dong and Griffin, Patrick R and Chen, Taosheng}, journal={Nature communications}, volume={8}, number={1}, pages={741}, year={2017}, publisher={Nature Publishing Group} } - Sheff, J.. ((2017). Towards probing structure and function relationships of proteins in complex sample types using hx-ms.). PhD Thesis.
[Bibtex]@phdthesis{sheff2017towards, title={Towards Probing Structure and Function Relationships of Proteins in Complex Sample Types Using HX-MS}, author={Sheff, Joey}, year={2017}, school={University of Calgary} } - Zheng, J., Chang, M. R., Stites, R. E., Wang, Y., Bruning, J. B., Pascal, B. D., Novick, S. J., Garcia-Ordonez, R. D., Stayrook, K. R., Chalmers, M. J., & others. (2017). Hdx reveals the conformational dynamics of dna sequence specific vdr co-activator interactions. Nature communications, 8(1), 923.
[Bibtex]@article{zheng2017hdx, title={HDX reveals the conformational dynamics of DNA sequence specific VDR co-activator interactions}, author={Zheng, Jie and Chang, Mi Ra and Stites, Ryan E and Wang, Yong and Bruning, John B and Pascal, Bruce D and Novick, Scott J and Garcia-Ordonez, Ruben D and Stayrook, Keith R and Chalmers, Michael J and others}, journal={Nature communications}, volume={8}, number={1}, pages={923}, year={2017}, publisher={Nature Publishing Group} } - Lam, V. Q., Zheng, J., & Griffin, P. R.. (2017). Unique interactome network signatures for peroxisome proliferator-activated receptor gamma (ppar$\gamma$) modulation by functional selective ligands. Molecular & cellular proteomics, 16(12), 2098–2110.
[Bibtex]@article{lam2017unique, title={Unique Interactome Network Signatures for Peroxisome Proliferator-activated Receptor Gamma (PPAR$\gamma$) Modulation by Functional Selective Ligands}, author={Lam, Vinh Q and Zheng, Jie and Griffin, Patrick R}, journal={Molecular \& Cellular Proteomics}, volume={16}, number={12}, pages={2098--2110}, year={2017}, publisher={ASBMB} } - Francis, J. W., Goswami, D., Novick, S. J., Pascal, B. D., Weikum, E. R., Ortlund, E. A., Griffin, P. R., & Kahn, R. A.. (2017). Nucleotide binding to arl2 in the tbcd∙ arl2∙ $\beta$-tubulin complex drives conformational changes in beta-tubulin. Journal of molecular biology, 429(23), 3696–3716.
[Bibtex]@article{francis2017nucleotide, title={Nucleotide Binding to ARL2 in the TBCD∙ ARL2∙ $\beta$-Tubulin Complex Drives Conformational Changes in beta-Tubulin}, author={Francis, Joshua W and Goswami, Devrishi and Novick, Scott J and Pascal, Bruce D and Weikum, Emily R and Ortlund, Eric A and Griffin, Patrick R and Kahn, Richard A}, journal={Journal of molecular biology}, volume={429}, number={23}, pages={3696--3716}, year={2017}, publisher={Elsevier} } - Zhang, H., Qiao, A., Yang, D., Yang, L., Dai, A., De Graaf, C., Reedtz-Runge, S., Dharmarajan, V., Zhang, H., Han, G. W., & others. (2017). Structure of the full-length glucagon class b g-protein-coupled receptor. Nature, 546(7657), 259.
[Bibtex]@article{zhang2017structure, title={Structure of the full-length glucagon class B G-protein-coupled receptor}, author={Zhang, Haonan and Qiao, Anna and Yang, Dehua and Yang, Linlin and Dai, Antao and De Graaf, Chris and Reedtz-Runge, Steffen and Dharmarajan, Venkatasubramanian and Zhang, Hui and Han, Gye Won and others}, journal={Nature}, volume={546}, number={7657}, pages={259}, year={2017}, publisher={Nature Publishing Group} } - Lam, V., Zheng, J., & Griffin, P. R.. (2017). Unique interactome network signatures for ppary modulation by functional selective ligands. Molecular & cellular proteomics, mcp–000308.
[Bibtex]@article{lam2017unique, title={Unique interactome network signatures for PPARy modulation by functional selective ligands}, author={Lam, Vinh and Zheng, Jie and Griffin, Patrick Robert}, journal={Molecular \& Cellular Proteomics}, pages={mcp--000308}, year={2017}, publisher={ASBMB} } - Zhou, E. X., He, Y., de Waal, P. W., Gao, X., Kang, Y., Van Eps, N., Yin, Y., Pal, K., Goswami, D., White, T. A., & others. (2017). Identification of phosphorylation codes for arrestin recruitment by g protein-coupled receptors. Cell, 170(3), 457–469.
[Bibtex]@article{zhou2017identification, title={Identification of phosphorylation codes for arrestin recruitment by G protein-coupled receptors}, author={Zhou, X Edward and He, Yuanzheng and de Waal, Parker W and Gao, Xiang and Kang, Yanyong and Van Eps, Ned and Yin, Yanting and Pal, Kuntal and Goswami, Devrishi and White, Thomas A and others}, journal={Cell}, volume={170}, number={3}, pages={457--469}, year={2017}, publisher={Elsevier} } - Mast, N., Anderson, K. W., Johnson, K. M., Phan, T. T., Guengerich, P. F., & Pikuleva, I. A.. (2017). In vitro cytochrome p450 46a1 (cyp46a1) activation by neuroactive compounds. Journal of biological chemistry, 292(31), 12934–12946.
[Bibtex]@article{mast2017vitro, title={In vitro cytochrome P450 46A1 (CYP46A1) activation by neuroactive compounds}, author={Mast, Natalia and Anderson, Kyle W and Johnson, Kevin M and Phan, Thanh TN and Guengerich, F Peter and Pikuleva, Irina A}, journal={Journal of Biological Chemistry}, volume={292}, number={31}, pages={12934--12946}, year={2017}, publisher={ASBMB} } - Gu, X., Yan, Y., Novick, S. J., Kovach, A., Goswami, D., Ke, J., Tan, M. E., Wang, L., Li, X., de Waal, P. W., & others. (2017). Deconvoluting amp-activated protein kinase (ampk) adenine nucleotide binding and sensing. Journal of biological chemistry, 292(30), 12653–12666.
[Bibtex]@article{gu2017deconvoluting, title={Deconvoluting AMP-activated protein kinase (AMPK) adenine nucleotide binding and sensing}, author={Gu, Xin and Yan, Yan and Novick, Scott J and Kovach, Amanda and Goswami, Devrishi and Ke, Jiyuan and Tan, MH Eileen and Wang, Lili and Li, Xiaodan and de Waal, Parker W and others}, journal={Journal of Biological Chemistry}, volume={292}, number={30}, pages={12653--12666}, year={2017}, publisher={ASBMB} } - de Vera, I. M. S., Zheng, J., Novick, S., Shang, J., Hughes, T. S., Brust, R., Munoz-Tello, P., Gardner Jr, W. J., Marciano, D. P., Kong, X., & others. (2017). Synergistic regulation of coregulator/nuclear receptor interaction by ligand and dna. Structure, 25(10), 1506–1518.
[Bibtex]@article{de2017synergistic, title={Synergistic Regulation of Coregulator/Nuclear Receptor Interaction by Ligand and DNA}, author={de Vera, Ian Mitchelle S and Zheng, Jie and Novick, Scott and Shang, Jinsai and Hughes, Travis S and Brust, Richard and Munoz-Tello, Paola and Gardner Jr, William J and Marciano, David P and Kong, Xiangming and others}, journal={Structure}, volume={25}, number={10}, pages={1506--1518}, year={2017}, publisher={Elsevier} } - Anderson, K. W., Mast, N., Hudgens, J. W., Lin, J. B., Turko, I. V., & Pikuleva, I. A.. (2016). Cholesterol hydroxylase cyp46a1: mapping of the allosteric site for efavirenz, a drug that stimulates enzyme activity. Journal of biological chemistry, jbc–M116.
[Bibtex]@article{anderson2016cholesterol, title={Cholesterol Hydroxylase CYP46A1: Mapping of the Allosteric Site for Efavirenz, a Drug that Stimulates Enzyme Activity}, author={Anderson, Kyle W and Mast, Natalia and Hudgens, Jeffrey W and Lin, Joseph B and Turko, Illarion V and Pikuleva, Irina A}, journal={Journal of Biological Chemistry}, pages={jbc--M116}, year={2016}, publisher={ASBMB} } - Johnson, B., Li, J., Adhikari, J., Edwards, M. R., Zhang, H., Schwarz, T., Leung, D. W., Basler, C. F., Gross, M. L., & Amarasinghe, G. K.. (2016). Dimerization controls marburg virus vp24-dependent modulation of host antioxidative stress responses. Journal of molecular biology, 428(17), 3483–3494.
[Bibtex]@article{johnson2016dimerization, title={Dimerization controls Marburg virus VP24-dependent modulation of host antioxidative stress responses}, author={Johnson, Britney and Li, Jing and Adhikari, Jagat and Edwards, Megan R and Zhang, Hao and Schwarz, Toni and Leung, Daisy W and Basler, Christopher F and Gross, Michael L and Amarasinghe, Gaya K}, journal={Journal of molecular biology}, volume={428}, number={17}, pages={3483--3494}, year={2016}, publisher={Elsevier} } - Guttman, M., & Lee, K. K.. (2016). Isotope labeling of biomolecules: structural analysis of viruses by hdx-ms. In Methods in enzymology (, Vol. 566pp. 405–426). Elsevier.
[Bibtex]@incollection{guttman2016isotope, title={Isotope labeling of biomolecules: Structural analysis of viruses by hdx-ms}, author={Guttman, Miklos and Lee, Kelly K}, booktitle={Methods in enzymology}, volume={566}, pages={405--426}, year={2016}, publisher={Elsevier} } - Artigues, A., Nadeau, O. W., Rimmer, M. A., Villar, M. T., Du, X., Fenton, A. W., & Carlson, G. M.. (2016). Protein structural analysis via mass spectrometry-based proteomics. In Modern proteomics–sample preparation, analysis and practical applications (pp. 397–431). Springer.
[Bibtex]@incollection{artigues2016protein, title={Protein structural analysis via mass spectrometry-based proteomics}, author={Artigues, Antonio and Nadeau, Owen W and Rimmer, Mary Ashley and Villar, Maria T and Du, Xiuxia and Fenton, Aron W and Carlson, Gerald M}, booktitle={Modern Proteomics--Sample Preparation, Analysis and Practical Applications}, pages={397--431}, year={2016}, publisher={Springer} } - Zhu, S., Fage, C. D., Hegemann, J. D., Mielcarek, A., Yan, D., Linne, U., & Marahiel, M. A.. (2016). The b1 protein guides the biosynthesis of a lasso peptide. Scientific reports, 6, 35604.
[Bibtex]@article{zhu2016b1, title={The B1 Protein Guides the Biosynthesis of a Lasso Peptide}, author={Zhu, Shaozhou and Fage, Christopher D and Hegemann, Julian D and Mielcarek, Andreas and Yan, Dushan and Linne, Uwe and Marahiel, Mohamed A}, journal={Scientific reports}, volume={6}, pages={35604}, year={2016}, publisher={Nature Publishing Group} } - Zhang, X.. (2016). Instant integrated ultradeep quantitative-structural membrane proteomics discovered post-translational modification signatures for human cys-loop receptor subunit bias. Molecular & cellular proteomics, 15(12), 3665–3684.
[Bibtex]@article{zhang2016instant, title={Instant Integrated Ultradeep Quantitative-structural Membrane Proteomics Discovered Post-translational Modification Signatures for Human Cys-loop Receptor Subunit Bias}, author={Zhang, Xi}, journal={Molecular \& Cellular Proteomics}, volume={15}, number={12}, pages={3665--3684}, year={2016}, publisher={ASBMB} } - Hudgens, J. W., Huang, R. Y-C., & D’Ambro, E.. (2016). Method validation and standards in hydrogen/deuterium exchange mass spectrometry. Hydrogendeuterium exchange mass spectrometry: fundamentals, techniques and applications, 40–50.
[Bibtex]@article{hudgens2016method, title={Method validation and standards in hydrogen/deuterium exchange mass spectrometry}, author={Hudgens, Jeffrey W and Huang, Richard Y-C and D’Ambro, Emma}, journal={Hydrogendeuterium exchange mass spectrometry: Fundamentals, techniques and applications}, pages={40--50}, year={2016} } - Sarpe, V., & Schriemer, D. C.. (2016). Data processing in bottom-up hydrogen exchange mass spectrometry. Hydrogen exchange mass spectrometry of proteins, fundamentals, methods, and applications. chichester, uk: wiley, 37–51.
[Bibtex]@article{sarpe2016data, title={Data Processing in Bottom-Up Hydrogen Exchange Mass Spectrometry}, author={Sarpe, Vladimir and Schriemer, David C}, journal={Hydrogen Exchange Mass Spectrometry of Proteins, Fundamentals, Methods, and Applications. Chichester, UK: Wiley}, pages={37--51}, year={2016} } - Mays, S. G., Okafor, D. C., Whitby, R. J., Goswami, D., Stec, J., Flynn, A. R., Dugan, M. C., Jui, N. T., Griffin, P. R., & Ortlund, E. A.. (2016). Crystal structures of the nuclear receptor, liver receptor homolog 1, bound to synthetic agonists. Journal of biological chemistry, 291(49), 25281–25291.
[Bibtex]@article{mays2016crystal, title={Crystal Structures of the Nuclear Receptor, Liver Receptor Homolog 1, Bound to Synthetic Agonists}, author={Mays, Suzanne G and Okafor, C Denise and Whitby, Richard J and Goswami, Devrishi and Stec, J{\'o}zef and Flynn, Autumn R and Dugan, Michael C and Jui, Nathan T and Griffin, Patrick R and Ortlund, Eric A}, journal={Journal of Biological Chemistry}, volume={291}, number={49}, pages={25281--25291}, year={2016}, publisher={ASBMB} } - Zhang, Z., & Fang, J.. (2016). Extracting information from hydrogen exchange mass spectrometry data. Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications, 107.
[Bibtex]@article{zhang2016extracting, title={Extracting Information from Hydrogen Exchange Mass Spectrometry Data}, author={Zhang, Zhongqi and Fang, Jing}, journal={Hydrogen Exchange Mass Spectrometry of Proteins: Fundamentals, Methods, and Applications}, pages={107}, year={2016}, publisher={John Wiley \& Sons} } - Goswami, D., Marciano, D. P., Pascal, B. D., Chalmers, M. J., & Griffin, P. R.. (2016). Application of differential hydrogen exchange mass spectrometry in small molecule drug discovery. Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications, 209.
[Bibtex]@article{goswami2016application, title={Application of Differential Hydrogen Exchange Mass Spectrometry in Small Molecule Drug Discovery}, author={Goswami, Devrishi and Marciano, David P and Pascal, Bruce D and Chalmers, Michael J and Griffin, Patrick R}, journal={Hydrogen Exchange Mass Spectrometry of Proteins: Fundamentals, Methods, and Applications}, pages={209}, year={2016}, publisher={John Wiley \& Sons} } - Weis, D. D.. (2016). Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications John Wiley & Sons.
[Bibtex]@book{weis2016hydrogen, title={Hydrogen exchange mass spectrometry of proteins: fundamentals, methods, and applications}, author={Weis, David D}, year={2016}, publisher={John Wiley \& Sons} } - Brown, N. E.. ((2016). Integration of heterotrimeric g protein signaling by the regulator of g protein signaling 14 (rgs14): independent regulation of g$\alpha$ signaling by the rgs domain and gpr motif by the rgs domain and gpr motif.). PhD Thesis.
[Bibtex]@phdthesis{brown2016integration, title={Integration of Heterotrimeric G Protein Signaling by the Regulator of G Protein Signaling 14 (RGS14): Independent Regulation of G$\alpha$ Signaling by the RGS Domain and GPR Motif by the RGS domain and GPR motif}, author={Brown, Nicole E}, year={2016}, school={Emory University} } - Anderson, K. W., Mast, N., Hudgens, J. W., Lin, J. B., Turko, I. V., & Pikuleva, I. A.. (2016). Jbc papers in press. published on april 7, 2016 as manuscript m116. 723577. .
[Bibtex]@article{anderson2016jbc, title={JBC Papers in Press. Published on April 7, 2016 as Manuscript M116. 723577}, author={Anderson, Kyle W and Mast, Natalia and Hudgens, Jeffrey W and Lin, Joseph B and Turko, Illarion V and Pikuleva, Irina A}, year={2016} } - Cummins, D. J., Espada, A., Novick, S. J., Molina-Martin, M., Stites, R. E., Espinosa, J. F., Broughton, H., Goswami, D., Pascal, B. D., Dodge, J. A., & others. (2016). Two-site evaluation of the repeatability and precision of an automated dual-column hydrogen/deuterium exchange mass spectrometry platform. Analytical chemistry, 88(12), 6607–6614.
[Bibtex]@article{cummins2016two, title={Two-site evaluation of the repeatability and precision of an automated dual-column hydrogen/deuterium exchange mass spectrometry platform}, author={Cummins, David J and Espada, Alfonso and Novick, Scott J and Molina-Martin, Manuel and Stites, Ryan E and Espinosa, Juan Felix and Broughton, Howard and Goswami, Devrishi and Pascal, Bruce D and Dodge, Jeffrey A and others}, journal={Analytical chemistry}, volume={88}, number={12}, pages={6607--6614}, year={2016}, publisher={ACS Publications} } - Saltzberg, D. J., Broughton, H. B., Pellarin, R., Chalmers, M. J., Espada, A., Dodge, J. A., Pascal, B. D., Griffin, P. R., Humblet, C., & Sali, A.. (2016). A residue-resolved bayesian approach to quantitative interpretation of hydrogen–deuterium exchange from mass spectrometry: application to characterizing protein–ligand interactions. The journal of physical chemistry b, 121(15), 3493–3501.
[Bibtex]@article{saltzberg2016residue, title={A Residue-Resolved Bayesian Approach to Quantitative Interpretation of Hydrogen--Deuterium Exchange from Mass Spectrometry: Application to Characterizing Protein--Ligand Interactions}, author={Saltzberg, Daniel J and Broughton, Howard B and Pellarin, Riccardo and Chalmers, Michael J and Espada, Alfonso and Dodge, Jeffrey A and Pascal, Bruce D and Griffin, Patrick R and Humblet, Christine and Sali, Andrej}, journal={The Journal of Physical Chemistry B}, volume={121}, number={15}, pages={3493--3501}, year={2016}, publisher={ACS Publications} } - Hourdel, V., Volant, S., O’Brien, D. P., Chenal, A., Chamot-Rooke, J., Dillies, M., & Brier, S.. (2016). Memhdx: an interactive tool to expedite the statistical validation and visualization of large hdx-ms datasets. Bioinformatics, 32(22), 3413–3419.
[Bibtex]@article{hourdel2016memhdx, title={MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets}, author={Hourdel, V{\'e}ronique and Volant, Stevenn and O’Brien, Darragh P and Chenal, Alexandre and Chamot-Rooke, Julia and Dillies, Marie-Agn{\`e}s and Brier, S{\'e}bastien}, journal={Bioinformatics}, volume={32}, number={22}, pages={3413--3419}, year={2016}, publisher={Oxford University Press} } - Espada, A., Broughton, H., Jones, S., Chalmers, M. J., & Dodge, J. A.. (2016). A binding site on il-17a for inhibitory macrocycles revealed by hydrogen/deuterium exchange mass spectrometry. Journal of medicinal chemistry, 59(5), 2255–2260.
[Bibtex]@article{espada2016binding, title={A binding site on IL-17A for inhibitory macrocycles revealed by hydrogen/deuterium exchange mass spectrometry}, author={Espada, Alfonso and Broughton, Howard and Jones, Spencer and Chalmers, Michael J and Dodge, Jeffrey A}, journal={Journal of medicinal chemistry}, volume={59}, number={5}, pages={2255--2260}, year={2016}, publisher={ACS Publications} } - Lössl, P., van de Waterbeemd, M., & Heck, A. J.. (2016). The diverse and expanding role of mass spectrometry in structural and molecular biology. The embo journal, e201694818.
[Bibtex]@article{lossl2016diverse, title={The diverse and expanding role of mass spectrometry in structural and molecular biology}, author={L{\"o}ssl, Philip and van de Waterbeemd, Michiel and Heck, Albert JR}, journal={The EMBO journal}, pages={e201694818}, year={2016}, publisher={EMBO Press} } - Fanning, S. W., Mayne, C. G., Dharmarajan, V., Carlson, K. E., Martin, T. A., Novick, S. J., Toy, W., Green, B., Panchamukhi, S., Katzenellenbogen, B. S., & others. (2016). Estrogen receptor alpha somatic mutations y537s and d538g confer breast cancer endocrine resistance by stabilizing the activating function-2 binding conformation. Elife, 5.
[Bibtex]@article{fanning2016estrogen, title={Estrogen receptor alpha somatic mutations Y537S and D538G confer breast cancer endocrine resistance by stabilizing the activating function-2 binding conformation}, author={Fanning, Sean W and Mayne, Christopher G and Dharmarajan, Venkatasubramanian and Carlson, Kathryn E and Martin, Teresa A and Novick, Scott J and Toy, Weiyi and Green, Bradley and Panchamukhi, Srinivas and Katzenellenbogen, Benita S and others}, journal={Elife}, volume={5}, year={2016}, publisher={eLife Sciences Publications, Ltd} } - Gallagher, E. S., & Hudgens, J. W.. (2016). Mapping protein–ligand interactions with proteolytic fragmentation, hydrogen/deuterium exchange-mass spectrometry. In Methods in enzymology (, Vol. 566pp. 357–404). Elsevier.
[Bibtex]@incollection{gallagher2016mapping, title={Mapping protein--ligand interactions with proteolytic fragmentation, hydrogen/deuterium exchange-mass spectrometry}, author={Gallagher, Elyssia S and Hudgens, Jeffrey W}, booktitle={Methods in enzymology}, volume={566}, pages={357--404}, year={2016}, publisher={Elsevier} } - Mo, Z., Zhang, Q., Liu, Z., Lauer, J., Shi, Y., Sun, L., Griffin, P. R., & Yang, X.. (2016). Neddylation requires glycyl-trna synthetase to protect activated e2. Nature structural and molecular biology, 23(8), 730.
[Bibtex]@article{mo2016neddylation, title={Neddylation requires glycyl-tRNA synthetase to protect activated E2}, author={Mo, Zhongying and Zhang, Qian and Liu, Ze and Lauer, Janelle and Shi, Yi and Sun, Litao and Griffin, Patrick R and Yang, Xiang-Lei}, journal={Nature Structural and Molecular Biology}, volume={23}, number={8}, pages={730}, year={2016}, publisher={Nature Publishing Group} } - Deng, B., Lento, C., & Wilson, D. J.. (2016). Hydrogen deuterium exchange mass spectrometry in biopharmaceutical discovery and development–a review. Analytica chimica acta, 940, 8–20.
[Bibtex]@article{deng2016hydrogen, title={Hydrogen deuterium exchange mass spectrometry in biopharmaceutical discovery and development--A review}, author={Deng, Bin and Lento, Cristina and Wilson, Derek J}, journal={Analytica chimica acta}, volume={940}, pages={8--20}, year={2016}, publisher={Elsevier} } - Chang, M. R., Dharmarajan, V., Doebelin, C., Garcia-Ordonez, R. D., Novick, S. J., Kuruvilla, D. S., Kamenecka, T. M., & Griffin, P. R.. (2016). Synthetic roryt agonists enhance protective immunity. Acs chemical biology, 11(4), 1012–1018.
[Bibtex]@article{chang2016synthetic, title={Synthetic RORyt agonists enhance protective immunity}, author={Chang, Mi Ra and Dharmarajan, Venkatasubramanian and Doebelin, Christelle and Garcia-Ordonez, Ruben D and Novick, Scott J and Kuruvilla, Dana S and Kamenecka, Theodore M and Griffin, Patrick R}, journal={ACS chemical biology}, volume={11}, number={4}, pages={1012--1018}, year={2016}, publisher={ACS Publications} } - Srinivasan, S., Dharmarajan, V., Reed, D. K., Griffin, P. R., & Schmid, S. L.. (2016). Identification and function of conformational dynamics in the multidomain gtpase dynamin. The embo journal, 35(4), 443–457.
[Bibtex]@article{srinivasan2016identification, title={Identification and function of conformational dynamics in the multidomain GTPase dynamin}, author={Srinivasan, Saipraveen and Dharmarajan, Venkatasubramanian and Reed, Dana Kim and Griffin, Patrick R and Schmid, Sandra L}, journal={The EMBO journal}, volume={35}, number={4}, pages={443--457}, year={2016}, publisher={EMBO Press} } - Mayne, L.. (2016). Hydrogen exchange mass spectrometry. In Methods in enzymology (, Vol. 566pp. 335–356). Elsevier.
[Bibtex]@incollection{mayne2016hydrogen, title={Hydrogen exchange mass spectrometry}, author={Mayne, Leland}, booktitle={Methods in enzymology}, volume={566}, pages={335--356}, year={2016}, publisher={Elsevier} } - Feng, L., Dharmarajan, V., Serrao, E., Hoyte, A., Larue, R. C., Slaughter, A., Sharma, A., Plumb, M. R., Kessl, J. J., Fuchs, J. R., & others. (2016). The competitive interplay between allosteric hiv-1 integrase inhibitor bi/d and ledgf/p75 during the early stage of hiv-1 replication adversely affects inhibitor potency. Acs chemical biology, 11(5), 1313–1321.
[Bibtex]@article{feng2016competitive, title={The competitive interplay between allosteric HIV-1 integrase inhibitor BI/D and LEDGF/p75 during the early stage of HIV-1 replication adversely affects inhibitor potency}, author={Feng, Lei and Dharmarajan, Venkatasubramanian and Serrao, Erik and Hoyte, Ashley and Larue, Ross C and Slaughter, Alison and Sharma, Amit and Plumb, Matthew R and Kessl, Jacques J and Fuchs, James R and others}, journal={ACS chemical biology}, volume={11}, number={5}, pages={1313--1321}, year={2016}, publisher={ACS Publications} } - Anderson, K. W., Mast, N., Hudgens, J. W., Lin, J. B., Turko, I. V., & Pikuleva, I. A.. (2016). Mapping of the allosteric site in cholesterol hydroxylase cyp46a1 for efavirenz, a drug that stimulates enzyme activity. Journal of biological chemistry, 291(22), 11876–11886.
[Bibtex]@article{anderson2016mapping, title={Mapping of the allosteric site in cholesterol hydroxylase CYP46A1 for efavirenz, a drug that stimulates enzyme activity}, author={Anderson, Kyle W and Mast, Natalia and Hudgens, Jeffrey W and Lin, Joseph B and Turko, Illarion V and Pikuleva, Irina A}, journal={Journal of Biological Chemistry}, volume={291}, number={22}, pages={11876--11886}, year={2016}, publisher={ASBMB} } - Leitner, A.. (2016). Cross-linking and other structural proteomics techniques: how chemistry is enabling mass spectrometry applications in structural biology. Chemical science, 7(8), 4792–4803.
[Bibtex]@article{leitner2016cross, title={Cross-linking and other structural proteomics techniques: how chemistry is enabling mass spectrometry applications in structural biology}, author={Leitner, Alexander}, journal={Chemical Science}, volume={7}, number={8}, pages={4792--4803}, year={2016}, publisher={Royal Society of Chemistry} } - Pottiez, G.. (2015). Mass spectrometry: developmental approaches to answer biological questions Springer.
[Bibtex]@book{pottiez2015mass, title={Mass spectrometry: developmental approaches to answer biological questions}, author={Pottiez, Gwenael}, year={2015}, publisher={Springer} } - Zhang, J., May, E., Gross, M., Kendall, D., & Cole, J.. (2015). * hydrogen deuterium exchange mass spectrometry for the analysis of seca dimerization in solution. Mass spectrometry-based strategies for biomolecular structure analysis: steroid metabolites structures and protein-protein interactions, 109.
[Bibtex]@article{zhang2015hydrogen, title={* Hydrogen Deuterium Exchange Mass Spectrometry for the Analysis of SecA Dimerization in Solution}, author={Zhang, J and May, ER and Gross, ML and Kendall, DA and Cole, JL}, journal={Mass Spectrometry-Based Strategies for Biomolecular Structure Analysis: Steroid Metabolites Structures and Protein-Protein Interactions}, pages={109}, year={2015} } - Petrotchenko, E. V., & Borchers, C. H.. (2015). Hdx match software for the data analysis of top-down ecd-ftms hydrogen/deuterium exchange experiments. Journal of the american society for mass spectrometry, 26(11), 1895–1898.
[Bibtex]@article{petrotchenko2015hdx, title={HDX match software for the data analysis of top-down ECD-FTMS hydrogen/deuterium exchange experiments}, author={Petrotchenko, Evgeniy V and Borchers, Christoph H}, journal={Journal of The American Society for Mass Spectrometry}, volume={26}, number={11}, pages={1895--1898}, year={2015}, publisher={Springer} } - Narayan, V., Landré, V., Ning, J., Hernychova, L., Muller, P., Verma, C., Walkinshaw, M. D., Blackburn, E. A., & Ball, K. L.. (2015). Protein–protein interactions modulate the docking-dependent e3-ubiquitin ligase activity of carboxy-terminus of hsc70-interacting protein (chip). Molecular & cellular proteomics, 14(11), 2973–2987.
[Bibtex]@article{narayan2015protein, title={Protein--Protein Interactions Modulate the Docking-Dependent E3-Ubiquitin Ligase Activity of Carboxy-Terminus of Hsc70-Interacting Protein (CHIP)}, author={Narayan, Vikram and Landr{\'e}, Vivien and Ning, Jia and Hernychova, Lenka and Muller, Petr and Verma, Chandra and Walkinshaw, Malcolm D and Blackburn, Elizabeth A and Ball, Kathryn L}, journal={Molecular \& Cellular Proteomics}, volume={14}, number={11}, pages={2973--2987}, year={2015}, publisher={ASBMB} } - Yan, Y., Grant, G. A., & Gross, M. L.. (2015). Hydrogen–deuterium exchange mass spectrometry reveals unique conformational and chemical transformations occurring upon [4fe-4s] cluster binding in the type 2 l-serine dehydratase from legionella pneumophila. Biochemistry, 54(34), 5322–5328.
[Bibtex]@article{yan2015hydrogen, title={Hydrogen--Deuterium Exchange Mass Spectrometry Reveals Unique Conformational and Chemical Transformations Occurring upon [4Fe-4S] Cluster Binding in the Type 2 l-Serine Dehydratase from Legionella pneumophila}, author={Yan, Yuetian and Grant, Gregory A and Gross, Michael L}, journal={Biochemistry}, volume={54}, number={34}, pages={5322--5328}, year={2015}, publisher={ACS Publications} } - Lindner, R., Heintz, U., & Winkler, A.. (2015). Applications of hydrogen deuterium exchange (hdx) for the characterization of conformational dynamics in light-activated photoreceptors. Frontiers in molecular biosciences, 2, 33.
[Bibtex]@article{lindner2015applications, title={Applications of hydrogen deuterium exchange (HDX) for the characterization of conformational dynamics in light-activated photoreceptors}, author={Lindner, Robert and Heintz, Udo and Winkler, Andreas}, journal={Frontiers in molecular biosciences}, volume={2}, pages={33}, year={2015}, publisher={Frontiers} } - Li, S., Lee, S. Y., & Chung, K. Y.. (2015). Conformational analysis of g protein-coupled receptor signaling by hydrogen/deuterium exchange mass spectrometry. In Methods in enzymology (, Vol. 557pp. 261–278). Elsevier.
[Bibtex]@incollection{li2015conformational, title={Conformational analysis of g protein-coupled receptor signaling by hydrogen/deuterium exchange mass spectrometry}, author={Li, Sheng and Lee, Su Youn and Chung, Ka Young}, booktitle={Methods in enzymology}, volume={557}, pages={261--278}, year={2015}, publisher={Elsevier} } - Peng, Y., Zeng, W., Ye, H., Han, K. H., Dharmarajan, V., Novick, S., Wilson, I. A., Griffin, P. R., Friedman, J. M., & Lerner, R. A.. (2015). A general method for insertion of functional proteins within proteins via combinatorial selection of permissive junctions. Chemistry & biology, 22(8), 1134–1143.
[Bibtex]@article{peng2015general, title={A general method for insertion of functional proteins within proteins via combinatorial selection of permissive junctions}, author={Peng, Yingjie and Zeng, Wenwen and Ye, Hui and Han, Kyung Ho and Dharmarajan, Venkatasubramanian and Novick, Scott and Wilson, Ian A and Griffin, Patrick R and Friedman, Jeffrey M and Lerner, Richard A}, journal={Chemistry \& biology}, volume={22}, number={8}, pages={1134--1143}, year={2015}, publisher={Elsevier} } - Vandermarliere, E., Maddelein, D., Hulstaert, N., Stes, E., Di Michele, M., Gevaert, K., Jacoby, E., Brehmer, D., & Martens, L.. (2015). Pepshell: visualization of conformational proteomics data. Journal of proteome research, 14(4), 1987–1990.
[Bibtex]@article{vandermarliere2015pepshell, title={PepShell: visualization of conformational proteomics data}, author={Vandermarliere, Elien and Maddelein, Davy and Hulstaert, Niels and Stes, Elisabeth and Di Michele, Michela and Gevaert, Kris and Jacoby, Edgar and Brehmer, Dirk and Martens, Lennart}, journal={Journal of proteome research}, volume={14}, number={4}, pages={1987--1990}, year={2015}, publisher={ACS Publications} } - Goswami, D., Tuske, S., Pascal, B. D., Bauman, J. D., Patel, D., Arnold, E., & Griffin, P. R.. (2015). Differential isotopic enrichment to facilitate characterization of asymmetric multimeric proteins using hydrogen/deuterium exchange mass spectrometry. Analytical chemistry, 87(7), 4015–4022.
[Bibtex]@article{goswami2015differential, title={Differential isotopic enrichment to facilitate characterization of asymmetric multimeric proteins using hydrogen/deuterium exchange mass spectrometry}, author={Goswami, Devrishi and Tuske, Steve and Pascal, Bruce D and Bauman, Joseph D and Patel, Disha and Arnold, Eddy and Griffin, Patrick R}, journal={Analytical chemistry}, volume={87}, number={7}, pages={4015--4022}, year={2015}, publisher={ACS Publications} } - Pascal, B. D., West, G. M., Scharager-Tapia, C., Flefil, R., Moroni, T., Martinez-Acedo, P., Griffin, P. R., & Carvalloza, A. C.. (2015). Software analysis of uncorrelated ms1 peaks for discovery of post-translational modifications. Journal of the american society for mass spectrometry, 26(12), 2133–2140.
[Bibtex]@article{pascal2015software, title={Software analysis of uncorrelated MS1 peaks for discovery of post-translational modifications}, author={Pascal, Bruce D and West, Graham M and Scharager-Tapia, Catherina and Flefil, Ricardo and Moroni, Tina and Martinez-Acedo, Pablo and Griffin, Patrick R and Carvalloza, Anthony C}, journal={Journal of the American Society for Mass Spectrometry}, volume={26}, number={12}, pages={2133--2140}, year={2015}, publisher={Springer} } - Marcsisin, S. R., Liptak, C., Marineau, J., Bradner, J. E., & Engen, J. R.. (2015). Tag and capture flow hydrogen exchange mass spectrometry with a fluorous-immobilized probe. Analytical chemistry, 87(12), 6349–6356.
[Bibtex]@article{marcsisin2015tag, title={Tag and capture flow hydrogen exchange mass spectrometry with a fluorous-immobilized probe}, author={Marcsisin, Sean R and Liptak, Cary and Marineau, Jason and Bradner, James E and Engen, John R}, journal={Analytical chemistry}, volume={87}, number={12}, pages={6349--6356}, year={2015}, publisher={ACS Publications} } - Pottiez, G.. (2015). Computer-assisted data processing, analysis and mining for new applications. In Mass spectrometry: developmental approaches to answer biological questions (pp. 65–71). Springer.
[Bibtex]@incollection{pottiez2015computer, title={Computer-Assisted Data Processing, Analysis and Mining for New Applications}, author={Pottiez, Gwenael}, booktitle={Mass Spectrometry: Developmental Approaches to Answer Biological Questions}, pages={65--71}, year={2015}, publisher={Springer} } - Elferich, J.. (2015). Using computational and experimental approaches to understand protein function: application to proprotein convertases and other disease-related proteins. .
[Bibtex]@article{elferich2015using, title={Using computational and experimental approaches to understand protein function: application to proprotein convertases and other disease-related proteins}, author={Elferich, Johannes}, year={2015} } - Marciano, D. P., Kuruvilla, D. S., Pascal, B. D., & Griffin, P. R.. (2015). Identification of bexarotene as a ppar antagonist with hdx. Ppar research, 2015.
[Bibtex]@article{marciano2015identification, title={Identification of Bexarotene as a PPAR Antagonist with HDX}, author={Marciano, David P and Kuruvilla, Dana S and Pascal, Bruce D and Griffin, Patrick R}, journal={PPAR research}, volume={2015}, year={2015}, publisher={Hindawi} } - Brown, N. E., Goswami, D., Branch, M. R., Ramineni, S., Ortlund, E. A., Griffin, P. R., & Hepler, J. R.. (2015). Integration of g protein $\alpha$ (g$\alpha$) signaling by the regulator of g protein signaling 14 (rgs14). Journal of biological chemistry, 290(14), 9037–9049.
[Bibtex]@article{brown2015integration, title={Integration of G protein $\alpha$ (G$\alpha$) signaling by the regulator of G protein signaling 14 (RGS14)}, author={Brown, Nicole E and Goswami, Devrishi and Branch, Mary Rose and Ramineni, Suneela and Ortlund, Eric A and Griffin, Patrick R and Hepler, John R}, journal={Journal of Biological Chemistry}, volume={290}, number={14}, pages={9037--9049}, year={2015}, publisher={ASBMB} } - Campobasso, N., & Huddler, D.. (2015). Hydrogen deuterium mass spectrometry in drug discovery. Bioorganic & medicinal chemistry letters, 25(18), 3771–3776.
[Bibtex]@article{campobasso2015hydrogen, title={Hydrogen deuterium mass spectrometry in drug discovery}, author={Campobasso, Nino and Huddler, Donald}, journal={Bioorganic \& medicinal chemistry letters}, volume={25}, number={18}, pages={3771--3776}, year={2015}, publisher={Elsevier} } - He, W., Bai, G., Zhou, H., Wei, N., White, N. M., Lauer, J., Liu, H., Shi, Y., Dumitru, C. D., Lettieri, K., & others. (2015). Cmt2d neuropathy is linked to the neomorphic binding activity of glycyl-trna synthetase. Nature, 526(7575), 710.
[Bibtex]@article{he2015cmt2d, title={CMT2D neuropathy is linked to the neomorphic binding activity of glycyl-tRNA synthetase}, author={He, Weiwei and Bai, Ge and Zhou, Huihao and Wei, Na and White, Nicholas M and Lauer, Janelle and Liu, Huaqing and Shi, Yi and Dumitru, Calin Dan and Lettieri, Karen and others}, journal={Nature}, volume={526}, number={7575}, pages={710}, year={2015}, publisher={Nature Publishing Group} } - Zhang, X., & Miller, K. W.. (2015). Dodecyl maltopyranoside enabled purification of active human gaba type a receptors for deep and direct proteomic sequencing. Molecular & cellular proteomics, 14(3), 724–738.
[Bibtex]@article{zhang2015dodecyl, title={Dodecyl maltopyranoside enabled purification of active human GABA type A receptors for deep and direct proteomic sequencing}, author={Zhang, Xi and Miller, Keith W}, journal={Molecular \& Cellular Proteomics}, volume={14}, number={3}, pages={724--738}, year={2015}, publisher={ASBMB} } - Kang, Y., Zhou, E. X., Gao, X., He, Y., Liu, W., Ishchenko, A., Barty, A., White, T. A., Yefanov, O., Han, G. W., & others. (2015). Crystal structure of rhodopsin bound to arrestin by femtosecond x-ray laser. Nature, 523(7562), 561.
[Bibtex]@article{kang2015crystal, title={Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser}, author={Kang, Yanyong and Zhou, X Edward and Gao, Xiang and He, Yuanzheng and Liu, Wei and Ishchenko, Andrii and Barty, Anton and White, Thomas A and Yefanov, Oleksandr and Han, Gye Won and others}, journal={Nature}, volume={523}, number={7562}, pages={561}, year={2015}, publisher={Nature Publishing Group} } - Yang, L., Yang, D., De Graaf, C., Moeller, A., West, G. M., Dharmarajan, V., Wang, C., Siu, F. Y., Song, G., Reedtz-Runge, S., & others. (2015). Conformational states of the full-length glucagon receptor. Nature communications, 6, 7859.
[Bibtex]@article{yang2015conformational, title={Conformational states of the full-length glucagon receptor}, author={Yang, Linlin and Yang, Dehua and De Graaf, Chris and Moeller, Arne and West, Graham M and Dharmarajan, Venkatasubramanian and Wang, Chong and Siu, Fai Y and Song, Gaojie and Reedtz-Runge, Steffen and others}, journal={Nature communications}, volume={6}, pages={7859}, year={2015}, publisher={Nature Publishing Group} } - Zhao, L., Zhou, E. X., Yi, W., Wu, Z., Liu, Y., Kang, Y., Hou, L., De Waal, P. W., Li, S., Jiang, Y., & others. (2015). Destabilization of strigolactone receptor dwarf14 by binding of ligand and e3-ligase signaling effector dwarf3. Cell research, 25(11), 1219.
[Bibtex]@article{zhao2015destabilization, title={Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3}, author={Zhao, Li-Hua and Zhou, X Edward and Yi, Wei and Wu, Zhongshan and Liu, Yue and Kang, Yanyong and Hou, Li and De Waal, Parker W and Li, Suling and Jiang, Yi and others}, journal={Cell research}, volume={25}, number={11}, pages={1219}, year={2015}, publisher={Nature Publishing Group} } - Marciano, D. P., Kuruvilla, D. S., Boregowda, S. V., Asteian, A., Hughes, T. S., Garcia-Ordonez, R., Corzo, C. A., Khan, T. M., Novick, S. J., Park, H., & others. (2015). Pharmacological repression of ppary promotes osteogenesis. Nature communications, 6, 7443.
[Bibtex]@article{marciano2015pharmacological, title={Pharmacological repression of PPARy promotes osteogenesis}, author={Marciano, David P and Kuruvilla, Dana S and Boregowda, Siddaraju V and Asteian, Alice and Hughes, Travis S and Garcia-Ordonez, Ruben and Corzo, Cesar A and Khan, Tanya M and Novick, Scott J and Park, HaJeung and others}, journal={Nature communications}, volume={6}, pages={7443}, year={2015}, publisher={Nature Publishing Group} } - Zhang, F., Yao, J., Ke, J., Zhang, L., Lam, V. Q., Xin, X., Zhou, E. X., Chen, J., Brunzelle, J., Griffin, P. R., & others. (2015). Structural basis of jaz repression of myc transcription factors in jasmonate signalling. Nature, 525(7568), 269.
[Bibtex]@article{zhang2015structural, title={Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling}, author={Zhang, Feng and Yao, Jian and Ke, Jiyuan and Zhang, Li and Lam, Vinh Q and Xin, Xiu-Fang and Zhou, X Edward and Chen, Jian and Brunzelle, Joseph and Griffin, Patrick R and others}, journal={Nature}, volume={525}, number={7568}, pages={269}, year={2015}, publisher={Nature Publishing Group} } - Engen, J. R., & Wales, T. E.. (2015). Analytical aspects of hydrogen exchange mass spectrometry. Annual review of analytical chemistry, 8, 127–148.
[Bibtex]@article{engen2015analytical, title={Analytical aspects of hydrogen exchange mass spectrometry}, author={Engen, John R and Wales, Thomas E}, journal={Annual review of analytical chemistry}, volume={8}, pages={127--148}, year={2015}, publisher={Annual Reviews} } - Leurs, U., Mistarz, U. H., & Rand, K. D.. (2015). Getting to the core of protein pharmaceuticals–comprehensive structure analysis by mass spectrometry. European journal of pharmaceutics and biopharmaceutics, 93, 95–109.
[Bibtex]@article{leurs2015getting, title={Getting to the core of protein pharmaceuticals--Comprehensive structure analysis by mass spectrometry}, author={Leurs, Ulrike and Mistarz, Ulrik H and Rand, Kasper D}, journal={European Journal of Pharmaceutics and Biopharmaceutics}, volume={93}, pages={95--109}, year={2015}, publisher={Elsevier} } - Schuhmacher, J. S., Rossmann, F., Dempwolff, F., Knauer, C., Altegoer, F., Steinchen, W., Dörrich, A. K., Klingl, A., Stephan, M., Linne, U., & others. (2015). Mind-like atpase flhg effects location and number of bacterial flagella during c-ring assembly. Proceedings of the national academy of sciences, 112(10), 3092–3097.
[Bibtex]@article{schuhmacher2015mind, title={MinD-like ATPase FlhG effects location and number of bacterial flagella during C-ring assembly}, author={Schuhmacher, Jan S and Rossmann, Florian and Dempwolff, Felix and Knauer, Carina and Altegoer, Florian and Steinchen, Wieland and D{\"o}rrich, Anja K and Klingl, Andreas and Stephan, Milena and Linne, Uwe and others}, journal={Proceedings of the National Academy of Sciences}, volume={112}, number={10}, pages={3092--3097}, year={2015}, publisher={National Acad Sciences} } - Majumdar, R., Middaugh, R. C., Weis, D. D., & Volkin, D. B.. (2015). Hydrogen-deuterium exchange mass spectrometry as an emerging analytical tool for stabilization and formulation development of therapeutic monoclonal antibodies. Journal of pharmaceutical sciences, 104(2), 327–345.
[Bibtex]@article{majumdar2015hydrogen, title={Hydrogen-deuterium exchange mass spectrometry as an emerging analytical tool for stabilization and formulation development of therapeutic monoclonal antibodies}, author={Majumdar, Ranajoy and Middaugh, C Russell and Weis, David D and Volkin, David B}, journal={Journal of pharmaceutical sciences}, volume={104}, number={2}, pages={327--345}, year={2015}, publisher={Elsevier} } - Mielcarek, A., Blauenburg, B., Miethke, M., & Marahiel, M. A.. (2015). Molecular insights into frataxin-mediated iron supply for heme biosynthesis in bacillus subtilis. Plos one, 10(3), e0122538.
[Bibtex]@article{mielcarek2015molecular, title={Molecular insights into frataxin-mediated iron supply for heme biosynthesis in Bacillus subtilis}, author={Mielcarek, Andreas and Blauenburg, Bastian and Miethke, Marcus and Marahiel, Mohamed A}, journal={PLoS One}, volume={10}, number={3}, pages={e0122538}, year={2015}, publisher={Public Library of Science} } - Kojetin, D. J., Matta-Camacho, E., Hughes, T. S., Srinivasan, S., Nwachukwu, J. C., Cavett, V., Nowak, J., Chalmers, M. J., Marciano, D. P., Kamenecka, T. M., & others. (2015). Structural mechanism for signal transduction in rxr nuclear receptor heterodimers. Nature communications, 6, 8013.
[Bibtex]@article{kojetin2015structural, title={Structural mechanism for signal transduction in RXR nuclear receptor heterodimers}, author={Kojetin, Douglas J and Matta-Camacho, Edna and Hughes, Travis S and Srinivasan, Sathish and Nwachukwu, Jerome C and Cavett, Valerie and Nowak, Jason and Chalmers, Michael J and Marciano, David P and Kamenecka, Theodore M and others}, journal={Nature communications}, volume={6}, pages={8013}, year={2015}, publisher={Nature Publishing Group} } - Li, Z., Huang, R. Y-C., Yopp, D. C., Hileman, T. H., Santangelo, T. J., Hurwitz, J., Hudgens, J. W., & Kelman, Z.. (2014). A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein. Nucleic acids research, 42(9), 5776–5789.
[Bibtex]@article{li2014novel, title={A novel mechanism for regulating the activity of proliferating cell nuclear antigen by a small protein}, author={Li, Zhuo and Huang, Richard Y-C and Yopp, Daniel C and Hileman, Travis H and Santangelo, Thomas J and Hurwitz, Jerard and Hudgens, Jeffrey W and Kelman, Zvi}, journal={Nucleic acids research}, volume={42}, number={9}, pages={5776--5789}, year={2014}, publisher={Oxford University Press} } - Goswami, D., Callaway, C., Pascal, B. D., Kumar, R., Edwards, D. P., & Griffin, P. R.. (2014). Influence of domain interactions on conformational mobility of the progesterone receptor detected by hydrogen/deuterium exchange mass spectrometry. Structure, 22(7), 961–973.
[Bibtex]@article{goswami2014influence, title={Influence of domain interactions on conformational mobility of the progesterone receptor detected by hydrogen/deuterium exchange mass spectrometry}, author={Goswami, Devrishi and Callaway, Celetta and Pascal, Bruce D and Kumar, Raj and Edwards, Dean P and Griffin, Patrick R}, journal={Structure}, volume={22}, number={7}, pages={961--973}, year={2014}, publisher={Elsevier} } - Li, J., Rodnin, M. V., Ladokhin, A. S., & Gross, M. L.. (2014). Hydrogen–deuterium exchange and mass spectrometry reveal the ph-dependent conformational changes of diphtheria toxin t domain. Biochemistry, 53(43), 6849–6856.
[Bibtex]@article{li2014hydrogen, title={Hydrogen--deuterium exchange and mass spectrometry reveal the pH-dependent conformational changes of diphtheria toxin T domain}, author={Li, Jing and Rodnin, Mykola V and Ladokhin, Alexey S and Gross, Michael L}, journal={Biochemistry}, volume={53}, number={43}, pages={6849--6856}, year={2014}, publisher={ACS Publications} } - Shkriabai, N., Dharmarajan, V., Slaughter, A., Kessl, J. J., Larue, R. C., Feng, L., Fuchs, J. R., Griffin, P. R., & Kvaratskhelia, M.. (2014). A critical role of the c-terminal segment for allosteric inhibitor-induced aberrant multimerization of hiv-1 integrase. Journal of biological chemistry, 289(38), 26430–26440.
[Bibtex]@article{shkriabai2014critical, title={A critical role of the C-terminal segment for allosteric inhibitor-induced aberrant multimerization of HIV-1 integrase}, author={Shkriabai, Nikoloz and Dharmarajan, Venkatasubramanian and Slaughter, Alison and Kessl, Jacques J and Larue, Ross C and Feng, Lei and Fuchs, James R and Griffin, Patrick R and Kvaratskhelia, Mamuka}, journal={Journal of Biological Chemistry}, volume={289}, number={38}, pages={26430--26440}, year={2014}, publisher={ASBMB} } - Armstrong, E. H.. ((2014). The role of fatty acid binding protein 5 (fabp5) in peroxisome proliferator-activated receptor β/δ (pparβ/δ)–mediated fatty acid and retinoic acid signaling: a structural perspective.). PhD Thesis.
[Bibtex]@phdthesis{armstrong2014role, title={The Role of Fatty Acid Binding Protein 5 (FABP5) in Peroxisome Proliferator-Activated Receptor β/δ (PPARβ/δ)--Mediated Fatty Acid and Retinoic Acid Signaling: A Structural Perspective}, author={Armstrong, Eric H}, year={2014}, school={Emory University} } - Zhang, Y., Majumder, E. L-W., Yue, H., Blankenship, R. E., & Gross, M. L.. (2014). Structural analysis of diheme cytochrome c by hydrogen–deuterium exchange mass spectrometry and homology modeling. Biochemistry, 53(35), 5619–5630.
[Bibtex]@article{zhang2014structural, title={Structural Analysis of Diheme Cytochrome c by Hydrogen--Deuterium Exchange Mass Spectrometry and Homology Modeling}, author={Zhang, Ying and Majumder, Erica L-W and Yue, Hai and Blankenship, Robert E and Gross, Michael L}, journal={Biochemistry}, volume={53}, number={35}, pages={5619--5630}, year={2014}, publisher={ACS Publications} } - Wowor, A. J., Yan, Y., Auclair, S. M., Yu, D., Zhang, J., May, E. R., Gross, M. L., Kendall, D. A., & Cole, J. L.. (2014). Analysis of seca dimerization in solution. Biochemistry, 53(19), 3248–3260.
[Bibtex]@article{wowor2014analysis, title={Analysis of SecA dimerization in solution}, author={Wowor, Andy J and Yan, Yuetian and Auclair, Sarah M and Yu, Dongmei and Zhang, Jun and May, Eric R and Gross, Michael L and Kendall, Debra A and Cole, James L}, journal={Biochemistry}, volume={53}, number={19}, pages={3248--3260}, year={2014}, publisher={ACS Publications} } - West, G. M., Willard, F. S., Sloop, K. W., Showalter, A. D., Pascal, B. D., & Griffin, P. R.. (2014). Glucagon-like peptide-1 receptor ligand interactions: structural cross talk between ligands and the extracellular domain. Plos one, 9(9), e105683.
[Bibtex]@article{west2014glucagon, title={Glucagon-like peptide-1 receptor ligand interactions: structural cross talk between ligands and the extracellular domain}, author={West, Graham M and Willard, Francis S and Sloop, Kyle W and Showalter, Aaron D and Pascal, Bruce D and Griffin, Patrick R}, journal={PloS one}, volume={9}, number={9}, pages={e105683}, year={2014}, publisher={Public Library of Science} } - Wang, J.. (2014). Interaction of the components in human and escherichia coli pyruvate dehydrogenase multienzyme complexes Rutgers The State University of New Jersey-Newark.
[Bibtex]@book{wang2014interaction, title={Interaction of the components in human and escherichia coli pyruvate dehydrogenase multienzyme complexes}, author={Wang, Junjie}, year={2014}, publisher={Rutgers The State University of New Jersey-Newark} } - Zheng, J., Yong, H. Y., Panutdaporn, N., Liu, C., Tang, K., & Luo, D.. (2014). High-resolution hdx-ms reveals distinct mechanisms of rna recognition and activation by rig-i and mda5. Nucleic acids research, 43(2), 1216–1230.
[Bibtex]@article{zheng2014high, title={High-resolution HDX-MS reveals distinct mechanisms of RNA recognition and activation by RIG-I and MDA5}, author={Zheng, Jie and Yong, Hui Yee and Panutdaporn, Nantika and Liu, Chuanfa and Tang, Kai and Luo, Dahai}, journal={Nucleic acids research}, volume={43}, number={2}, pages={1216--1230}, year={2014}, publisher={Oxford University Press} } - Qiang, G., Xue, S., Yang, J. J., Du, G., Pang, X., Li, X., Goswami, D., Griffin, P. R., Ortlund, E. A., Chan, C. B., & others. (2014). Identification of a small molecular insulin receptor agonist with potent antidiabetes activity. Diabetes, 63(4), 1394–1409.
[Bibtex]@article{qiang2014identification, title={Identification of a small molecular insulin receptor agonist with potent antidiabetes activity}, author={Qiang, Guifen and Xue, Shenghui and Yang, Jenny J and Du, Guanhua and Pang, Xiaobin and Li, Xiaoting and Goswami, Devrishi and Griffin, Patrick R and Ortlund, Eric A and Chan, Chi Bun and others}, journal={Diabetes}, volume={63}, number={4}, pages={1394--1409}, year={2014}, publisher={Am Diabetes Assoc} } - Zhang, Y., Goswami, D., Wang, D., Wang, T. A., Sen, S., Magliery, T. J., Griffin, P. R., Wang, F., & Schultz, P. G.. (2014). An antibody with a variable-region coiled-coil “knob” domain. Angewandte chemie, 126(1), 136–139.
[Bibtex]@article{zhang2014antibody, title={An Antibody with a Variable-Region Coiled-Coil “Knob” Domain}, author={Zhang, Yong and Goswami, Devrishi and Wang, Danling and Wang, Tsung-Shing Andrew and Sen, Shiladitya and Magliery, Thomas J and Griffin, Patrick R and Wang, Feng and Schultz, Peter G}, journal={Angewandte Chemie}, volume={126}, number={1}, pages={136--139}, year={2014}, publisher={Wiley Online Library} } - Lindner, R., Lou, X., Reinstein, J., Shoeman, R. L., Hamprecht, F. A., & Winkler, A.. (2014). Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation. Journal of the american society for mass spectrometry, 25(6), 1018–1028.
[Bibtex]@article{lindner2014hexicon, title={Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation}, author={Lindner, Robert and Lou, Xinghua and Reinstein, Jochen and Shoeman, Robert L and Hamprecht, Fred A and Winkler, Andreas}, journal={Journal of the American Society for Mass Spectrometry}, volume={25}, number={6}, pages={1018--1028}, year={2014}, publisher={Springer} } - Armstrong, E. H., Goswami, D., Griffin, P. R., Noy, N., & Ortlund, E. A.. (2014). Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor $\beta$/$\delta$ (fabp5-ppar$\beta$/$\delta$) signaling pathway. Journal of biological chemistry, 289(21), 14941–14954.
[Bibtex]@article{armstrong2014structural, title={Structural basis for ligand regulation of the fatty acid-binding protein 5, peroxisome proliferator-activated receptor $\beta$/$\delta$ (FABP5-PPAR$\beta$/$\delta$) signaling pathway}, author={Armstrong, Eric H and Goswami, Devrishi and Griffin, Patrick R and Noy, Noa and Ortlund, Eric A}, journal={Journal of Biological Chemistry}, volume={289}, number={21}, pages={14941--14954}, year={2014}, publisher={ASBMB} } - Kirschke, E., Goswami, D., Southworth, D., Griffin, P. R., & Agard, D. A.. (2014). Glucocorticoid receptor function regulated by coordinated action of the hsp90 and hsp70 chaperone cycles. Cell, 157(7), 1685–1697.
[Bibtex]@article{kirschke2014glucocorticoid, title={Glucocorticoid receptor function regulated by coordinated action of the Hsp90 and Hsp70 chaperone cycles}, author={Kirschke, Elaine and Goswami, Devrishi and Southworth, Daniel and Griffin, Patrick R and Agard, David A}, journal={Cell}, volume={157}, number={7}, pages={1685--1697}, year={2014}, publisher={Elsevier} } - Hughes, T. S., Giri, P. K., De Vera, I. M. S., Marciano, D. P., Kuruvilla, D. S., Shin, Y., Blayo, A., Kamenecka, T. M., Burris, T. P., Griffin, P. R., & others. (2014). An alternate binding site for ppar$\gamma$ ligands. Nature communications, 5, 3571.
[Bibtex]@article{hughes2014alternate, title={An alternate binding site for PPAR$\gamma$ ligands}, author={Hughes, Travis S and Giri, Pankaj Kumar and De Vera, Ian Mitchelle S and Marciano, David P and Kuruvilla, Dana S and Shin, Youseung and Blayo, Anne-Laure and Kamenecka, Theodore M and Burris, Thomas P and Griffin, Patrick R and others}, journal={Nature communications}, volume={5}, pages={3571}, year={2014}, publisher={Nature Publishing Group} } - Pirrone, G. F., Iacob, R. E., & Engen, J. R.. (2014). Applications of hydrogen/deuterium exchange ms from 2012 to 2014. Analytical chemistry, 87(1), 99–118.
[Bibtex]@article{pirrone2014applications, title={Applications of hydrogen/deuterium exchange MS from 2012 to 2014}, author={Pirrone, Gregory F and Iacob, Roxana E and Engen, John R}, journal={Analytical chemistry}, volume={87}, number={1}, pages={99--118}, year={2014}, publisher={ACS Publications} } - Underbakke, E. S., Iavarone, A. T., Chalmers, M. J., Pascal, B. D., Novick, S., Griffin, P. R., & Marletta, M. A.. (2014). Nitric oxide-induced conformational changes in soluble guanylate cyclase. Structure, 22(4), 602–611.
[Bibtex]@article{underbakke2014nitric, title={Nitric oxide-induced conformational changes in soluble guanylate cyclase}, author={Underbakke, Eric S and Iavarone, Anthony T and Chalmers, Michael J and Pascal, Bruce D and Novick, Scott and Griffin, Patrick R and Marletta, Michael A}, journal={Structure}, volume={22}, number={4}, pages={602--611}, year={2014}, publisher={Elsevier} } - Marciano, D. P., Dharmarajan, V., & Griffin, P. R.. (2014). Hdx-ms guided drug discovery: small molecules and biopharmaceuticals. Current opinion in structural biology, 28, 105–111.
[Bibtex]@article{marciano2014hdx, title={HDX-MS guided drug discovery: small molecules and biopharmaceuticals}, author={Marciano, David P and Dharmarajan, Venkatasubramanian and Griffin, Patrick R}, journal={Current opinion in structural biology}, volume={28}, pages={105--111}, year={2014}, publisher={Elsevier} } - Huang, R. Y-C., & Chen, G.. (2014). Higher order structure characterization of protein therapeutics by hydrogen/deuterium exchange mass spectrometry. Analytical and bioanalytical chemistry, 406(26), 6541–6558.
[Bibtex]@article{huang2014higher, title={Higher order structure characterization of protein therapeutics by hydrogen/deuterium exchange mass spectrometry}, author={Huang, Richard Y-C and Chen, Guodong}, journal={Analytical and bioanalytical chemistry}, volume={406}, number={26}, pages={6541--6558}, year={2014}, publisher={Springer} } - Rey, M., Sarpe, V., Burns, K. M., Buse, J., Baker, C. A., Van Dijk, M., Wordeman, L., Bonvin, A. M., & Schriemer, D. C.. (2014). Mass spec studio for integrative structural biology. Structure, 22(10), 1538–1548.
[Bibtex]@article{rey2014mass, title={Mass spec studio for integrative structural biology}, author={Rey, Martial and Sarpe, Vladimir and Burns, Kyle M and Buse, Joshua and Baker, Charles AH and Van Dijk, Marc and Wordeman, Linda and Bonvin, Alexandre MJJ and Schriemer, David C}, journal={Structure}, volume={22}, number={10}, pages={1538--1548}, year={2014}, publisher={Elsevier} } - Li, Z.. ((2013). Archaeal dna replication proteins: members and functions.). PhD Thesis.
[Bibtex]@phdthesis{li2013archaeal, title={Archaeal DNA replication proteins: Members and functions}, author={Li, Zhuo}, year={2013}, school={University of Maryland, College Park} } - Liu, Q., Easterling, M. L., & Agar, J. N.. (2013). Resolving isotopic fine structure to detect and quantify natural abundance-and hydrogen/deuterium exchange-derived isotopomers. Analytical chemistry, 86(1), 820–825.
[Bibtex]@article{liu2013resolving, title={Resolving isotopic fine structure to detect and quantify natural abundance-and hydrogen/deuterium exchange-derived isotopomers}, author={Liu, Qian and Easterling, Michael L and Agar, Jeffrey N}, journal={Analytical chemistry}, volume={86}, number={1}, pages={820--825}, year={2013}, publisher={ACS Publications} } - Ahn, J.. (2013). Local hydrogen deuterium exchange mass spectrometry: from pressurized online digestion to pepsin proteolysis.. .
[Bibtex]@article{ahn2013local, title={Local hydrogen deuterium exchange mass spectrometry: from pressurized online digestion to pepsin proteolysis.}, author={Ahn, Joomi}, year={2013} } - Hu, Y., & others. (2013). Application of hydrogen-deuterium exchange/mass spectrometry for determination of cytochrome c orientation on sams.. .
[Bibtex]@article{hu2013application, title={Application of Hydrogen-Deuterium Exchange/Mass Spectrometry for Determination of Cytochrome c Orientation on SAMs.}, author={Hu, Yuzhe and others}, year={2013} } - Singh, H.. ((2013). Hydrogen deuterium exchange mass spectrometry for protein-protein interaction and structural dynamics.). PhD Thesis.
[Bibtex]@phdthesis{singh2013hydrogen, title={Hydrogen deuterium exchange mass spectrometry for protein-protein interaction and structural dynamics}, author={Singh, Harsimran}, year={2013}, school={University of Alabama Libraries} } - Zhang, Q.. ((2013). Hydrogen/deuterium exchange coupled with ft-icr ms–instrumentation, software development and applications.). PhD Thesis.
[Bibtex]@phdthesis{zhang2013hydrogen, title={Hydrogen/deuterium exchange coupled with FT-ICR MS--Instrumentation, software development and applications}, author={Zhang, Qian}, year={2013}, school={The Florida State University} } - Wang, X., Li, Q., & Davies, M.. (2013). Development of antibody arrays for monoclonal antibody higher order structure analysis. Frontiers in pharmacology, 4, 103.
[Bibtex]@article{wang2013development, title={Development of antibody arrays for monoclonal antibody Higher Order Structure analysis}, author={Wang, Xing and Li, Qing and Davies, Michael}, journal={Frontiers in pharmacology}, volume={4}, pages={103}, year={2013}, publisher={Frontiers} } - Huang, R. Y-C., & Hudgens, J. W.. (2013). Effects of desialylation on human α1-acid glycoprotein− ligand interactions. Biochemistry, 52(40), 7127–7136.
[Bibtex]@article{huang2013effects, title={Effects of Desialylation on Human α1-Acid Glycoprotein− Ligand Interactions}, author={Huang, Richard Y-C and Hudgens, Jeffrey W}, journal={Biochemistry}, volume={52}, number={40}, pages={7127--7136}, year={2013}, publisher={ACS Publications} } - Underbakke, E. S., Iavarone, A. T., & Marletta, M. A.. (2013). Higher-order interactions bridge the nitric oxide receptor and catalytic domains of soluble guanylate cyclase. Proceedings of the national academy of sciences, 110(17), 6777–6782.
[Bibtex]@article{underbakke2013higher, title={Higher-order interactions bridge the nitric oxide receptor and catalytic domains of soluble guanylate cyclase}, author={Underbakke, Eric S and Iavarone, Anthony T and Marletta, Michael A}, journal={Proceedings of the National Academy of Sciences}, volume={110}, number={17}, pages={6777--6782}, year={2013}, publisher={National Acad Sciences} } - Zhang, J., Ramachandran, P., Kumar, R., & Gross, M. L.. (2013). H/d exchange centroid monitoring is insufficient to show differences in the behavior of protein states. Journal of the american society for mass spectrometry, 24(3), 450–453.
[Bibtex]@article{zhang2013h, title={H/D exchange centroid monitoring is insufficient to show differences in the behavior of protein states}, author={Zhang, Jun and Ramachandran, Pradeep and Kumar, Rajiv and Gross, Michael L}, journal={Journal of the American Society for Mass Spectrometry}, volume={24}, number={3}, pages={450--453}, year={2013}, publisher={Springer} } - Goswami, D., Devarakonda, S., Chalmers, M. J., Pascal, B. D., Spiegelman, B. M., & Griffin, P. R.. (2013). Time window expansion for hdx analysis of an intrinsically disordered protein. Journal of the american society for mass spectrometry, 24(10), 1584–1592.
[Bibtex]@article{goswami2013time, title={Time window expansion for HDX analysis of an intrinsically disordered protein}, author={Goswami, Devrishi and Devarakonda, Srikripa and Chalmers, Michael J and Pascal, Bruce D and Spiegelman, Bruce M and Griffin, Patrick R}, journal={Journal of the American Society for Mass Spectrometry}, volume={24}, number={10}, pages={1584--1592}, year={2013}, publisher={Springer} } - Guttman, M., Weis, D. D., Engen, J. R., & Lee, K. K.. (2013). Analysis of overlapped and noisy hydrogen/deuterium exchange mass spectra. Journal of the american society for mass spectrometry, 24(12), 1906–1912.
[Bibtex]@article{guttman2013analysis, title={Analysis of overlapped and noisy hydrogen/deuterium exchange mass spectra}, author={Guttman, Miklos and Weis, David D and Engen, John R and Lee, Kelly K}, journal={Journal of the American Society for Mass Spectrometry}, volume={24}, number={12}, pages={1906--1912}, year={2013}, publisher={Springer} } - Konermann, L., Vahidi, S., & Sowole, M. A.. (2013). Mass spectrometry methods for studying structure and dynamics of biological macromolecules. Analytical chemistry, 86(1), 213–232.
[Bibtex]@article{konermann2013mass, title={Mass spectrometry methods for studying structure and dynamics of biological macromolecules}, author={Konermann, Lars and Vahidi, Siavash and Sowole, Modupeola A}, journal={Analytical chemistry}, volume={86}, number={1}, pages={213--232}, year={2013}, publisher={ACS Publications} } - Konijnenberg, A., Butterer, A., & Sobott, F.. (2013). Native ion mobility-mass spectrometry and related methods in structural biology. Biochimica et biophysica acta (bba)-proteins and proteomics, 1834(6), 1239–1256.
[Bibtex]@article{konijnenberg2013native, title={Native ion mobility-mass spectrometry and related methods in structural biology}, author={Konijnenberg, A and Butterer, A and Sobott, F}, journal={Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics}, volume={1834}, number={6}, pages={1239--1256}, year={2013}, publisher={Elsevier} } - Nakorchevsky, A., & Yates, J.. (2012). 1.17 mass spectrometry. .
[Bibtex]@article{nakorchevsky20121, title={1.17 Mass Spectrometry}, author={Nakorchevsky, A and Yates, JR}, year={2012}, publisher={Elsevier} } - Meyer, M., Shah, S., & Rao, A.. (2012). A paper to be submitted for publication.. The arabidopsis crinkly4 receptor-like kinase and homologs: regulation of kinase activity through intra-and intermolecular interactions, 1001, 116.
[Bibtex]@article{meyer2012paper, title={A paper to be submitted for publication.}, author={Meyer, MR and Shah, S and Rao, AG}, journal={The Arabidopsis CRINKLY4 receptor-like kinase and homologs: Regulation of kinase activity through intra-and intermolecular interactions}, volume={1001}, pages={116}, year={2012} } - Fajer, P. G., Bou-Assaf, G. M., & Marshall, A. G.. (2012). Improved sequence resolution by global analysis of overlapped peptides in hydrogen/deuterium exchange mass spectrometry. Journal of the american society for mass spectrometry, 23(7), 1202–1208.
[Bibtex]@article{fajer2012improved, title={Improved sequence resolution by global analysis of overlapped peptides in hydrogen/deuterium exchange mass spectrometry}, author={Fajer, Piotr G and Bou-Assaf, George M and Marshall, Alan G}, journal={Journal of the American Society for Mass Spectrometry}, volume={23}, number={7}, pages={1202--1208}, year={2012}, publisher={Springer} } - Kaur, P., & Chance, M. R.. (2012). The utility of mass spectrometry based structural proteomics in biopharmaceutical biologics development. In Integrative proteomics InTech.
[Bibtex]@incollection{kaur2012utility, title={The utility of mass spectrometry based structural proteomics in biopharmaceutical biologics development}, author={Kaur, Parminder and Chance, Mark R}, booktitle={Integrative Proteomics}, year={2012}, publisher={InTech} } - Wani, A. H., & Udgaonkar, J. B.. (2012). Mass spectrometry studies of protein folding. Curr sci, 102(2), 245–265.
[Bibtex]@article{wani2012mass, title={Mass spectrometry studies of protein folding}, author={Wani, Ajazul Hamid and Udgaonkar, Jayant B}, journal={Curr Sci}, volume={102}, number={2}, pages={245--265}, year={2012} } - Lampi, K. J., Fox, C. B., & David, L. L.. (2012). Changes in solvent accessibility of wild-type and deamidated $\beta$b2-crystallin following complex formation with $\alpha$a-crystallin. Experimental eye research, 104, 48–58.
[Bibtex]@article{lampi2012changes, title={Changes in solvent accessibility of wild-type and deamidated $\beta$B2-crystallin following complex formation with $\alpha$A-crystallin}, author={Lampi, Kirsten J and Fox, Cade B and David, Larry L}, journal={Experimental eye research}, volume={104}, pages={48--58}, year={2012}, publisher={Elsevier} } - Bobst, C. E., & Kaltashov, I. A.. (2012). Localizing flexible regions in proteins using hydrogen–deuterium exchange mass spectrometry. In Intrinsically disordered protein analysis (pp. 375–385). Springer.
[Bibtex]@incollection{bobst2012localizing, title={Localizing flexible regions in proteins using hydrogen--deuterium exchange mass spectrometry}, author={Bobst, Cedric E and Kaltashov, Igor A}, booktitle={Intrinsically Disordered Protein Analysis}, pages={375--385}, year={2012}, publisher={Springer} } - Prage, E. B.. (2012). Structural studies of inhibition of the human inducible prostaglandin e synthase mpges1 Vanderbilt University.
[Bibtex]@book{prage2012structural, title={Structural studies of inhibition of the human inducible prostaglandin E synthase MPGES1}, author={Prage, Edward B}, year={2012}, publisher={Vanderbilt University} } - Miller, D. E., Prasannan, C. B., Villar, M. T., Fenton, A. W., & Artigues, A.. (2012). Hdxfinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry. Journal of the american society for mass spectrometry, 23(2), 425–429.
[Bibtex]@article{miller2012hdxfinder, title={HDXFinder: automated analysis and data reporting of deuterium/hydrogen exchange mass spectrometry}, author={Miller, Danny E and Prasannan, Charulata B and Villar, Maria T and Fenton, Aron W and Artigues, Antonio}, journal={Journal of the American Society for Mass Spectrometry}, volume={23}, number={2}, pages={425--429}, year={2012}, publisher={Springer} } - Mizwicki, M. T., Menegaz, D., Zhang, J., Barrientos-Durán, A., Tse, S., Cashman, J. R., Griffin, P. R., & Fiala, M.. (2012). Genomic and nongenomic signaling induced by 1$\alpha$, 25 (oh) 2-vitamin d 3 promotes the recovery of amyloid-$\beta$ phagocytosis by alzheimer’s disease macrophages. Journal of alzheimer’s disease, 29(1), 51–62.
[Bibtex]@article{mizwicki2012genomic, title={Genomic and nongenomic signaling induced by 1$\alpha$, 25 (OH) 2-vitamin D 3 promotes the recovery of amyloid-$\beta$ phagocytosis by Alzheimer's disease macrophages}, author={Mizwicki, Mathew T and Menegaz, Danusa and Zhang, Jun and Barrientos-Dur{\'a}n, Antonio and Tse, Stephen and Cashman, John R and Griffin, Patrick R and Fiala, Milan}, journal={Journal of Alzheimer's Disease}, volume={29}, number={1}, pages={51--62}, year={2012}, publisher={IOS Press} } - Brock, A.. (2012). Fragmentation hydrogen exchange mass spectrometry: a review of methodology and applications. Protein expression and purification, 84(1), 19–37.
[Bibtex]@article{brock2012fragmentation, title={Fragmentation hydrogen exchange mass spectrometry: A review of methodology and applications}, author={Brock, Ansgar}, journal={Protein expression and purification}, volume={84}, number={1}, pages={19--37}, year={2012}, publisher={Elsevier} } - Walters, B. T., Ricciuti, A., Mayne, L., & Englander, W. S.. (2012). Minimizing back exchange in the hydrogen exchange-mass spectrometry experiment. Journal of the american society for mass spectrometry, 23(12), 2132–2139.
[Bibtex]@article{walters2012minimizing, title={Minimizing back exchange in the hydrogen exchange-mass spectrometry experiment}, author={Walters, Benjamin T and Ricciuti, Alec and Mayne, Leland and Englander, S Walter}, journal={Journal of the American Society for Mass Spectrometry}, volume={23}, number={12}, pages={2132--2139}, year={2012}, publisher={Springer} } - Hughes, T. S., Chalmers, M. J., Novick, S., Kuruvilla, D. S., Chang, M. R., Kamenecka, T. M., Rance, M., Johnson, B. A., Burris, T. P., Griffin, P. R., & others. (2012). Ligand and receptor dynamics contribute to the mechanism of graded ppar$\gamma$ agonism. Structure, 20(1), 139–150.
[Bibtex]@article{hughes2012ligand, title={Ligand and receptor dynamics contribute to the mechanism of graded PPAR$\gamma$ agonism}, author={Hughes, Travis S and Chalmers, Michael J and Novick, Scott and Kuruvilla, Dana S and Chang, Mi Ra and Kamenecka, Theodore M and Rance, Mark and Johnson, Bruce A and Burris, Thomas P and Griffin, Patrick R and others}, journal={Structure}, volume={20}, number={1}, pages={139--150}, year={2012}, publisher={Elsevier} } - Percy, A. J., Rey, M., Burns, K. M., & Schriemer, D. C.. (2012). Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry—a review. Analytica chimica acta, 721, 7–21.
[Bibtex]@article{percy2012probing, title={Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry—a review}, author={Percy, Andrew J and Rey, Martial and Burns, Kyle M and Schriemer, David C}, journal={Analytica chimica acta}, volume={721}, pages={7--21}, year={2012}, publisher={Elsevier} } - Soon, F., Ng, L., Zhou, E. X., West, G. M., Kovach, A., Tan, M. E., Suino-Powell, K. M., He, Y., Xu, Y., Chalmers, M. J., & others. (2012). Molecular mimicry regulates aba signaling by snrk2 kinases and pp2c phosphatases. Science, 335(6064), 85–88.
[Bibtex]@article{soon2012molecular, title={Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases}, author={Soon, Fen-Fen and Ng, Ley-Moy and Zhou, X Edward and West, Graham M and Kovach, Amanda and Tan, MH Eileen and Suino-Powell, Kelly M and He, Yuanzheng and Xu, Yong and Chalmers, Michael J and others}, journal={Science}, volume={335}, number={6064}, pages={85--88}, year={2012}, publisher={American Association for the Advancement of Science} } - Pascal, B. D., Willis, S., Lauer, J. L., Landgraf, R. R., West, G. M., Marciano, D., Novick, S., Goswami, D., Chalmers, M. J., & Griffin, P. R.. (2012). Hdx workbench: software for the analysis of h/d exchange ms data. Journal of the american society for mass spectrometry, 23(9), 1512–1521.
[Bibtex]@article{pascal2012hdx, title={HDX workbench: software for the analysis of H/D exchange MS data}, author={Pascal, Bruce D and Willis, Scooter and Lauer, Janelle L and Landgraf, Rachelle R and West, Graham M and Marciano, David and Novick, Scott and Goswami, Devrishi and Chalmers, Michael J and Griffin, Patrick R}, journal={Journal of the American Society for Mass Spectrometry}, volume={23}, number={9}, pages={1512--1521}, year={2012}, publisher={Springer} } - Zhang, Z., Zhang, A., & Xiao, G.. (2012). Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing. Analytical chemistry, 84(11), 4942–4949.
[Bibtex]@article{zhang2012improved, title={Improved protein hydrogen/deuterium exchange mass spectrometry platform with fully automated data processing}, author={Zhang, Zhongqi and Zhang, Aming and Xiao, Gang}, journal={Analytical chemistry}, volume={84}, number={11}, pages={4942--4949}, year={2012}, publisher={ACS Publications} } - Kan, Z., Mayne, L., Chetty, P. S., & Englander, W. S.. (2011). Exms: data analysis for hx-ms experiments. Journal of the american society for mass spectrometry, 22(11), 1906.
[Bibtex]@article{kan2011exms, title={ExMS: data analysis for HX-MS experiments}, author={Kan, Zhong-Yuan and Mayne, Leland and Chetty, Palaniappan Sevugan and Englander, S Walter}, journal={Journal of the American Society for Mass Spectrometry}, volume={22}, number={11}, pages={1906}, year={2011}, publisher={Springer} } - Lou, X.. ((2011). Biomedical data analysis with prior knowledge: modeling and learning.). PhD Thesis.
[Bibtex]@phdthesis{lou2011biomedical, title={Biomedical Data Analysis with Prior Knowledge: Modeling and Learning}, author={Lou, Xinghua}, year={2011} } - Kerfoot, S. A., & Gross, M. L.. (2011). Chemical footprinting for determining protein properties and interactions. Protein and peptide mass spectrometry in drug discovery, 175–211.
[Bibtex]@article{kerfoot2011chemical, title={Chemical Footprinting for Determining Protein Properties and Interactions}, author={Kerfoot, Sandra A and Gross, Michael L}, journal={Protein and Peptide Mass Spectrometry in Drug Discovery}, pages={175--211}, year={2011}, publisher={Wiley Online Library} } - Wright, E., Busby, S. A., Wisecarver, S., Vincent, J., Griffin, P. R., & Fernandez, E. J.. (2011). Helix 11 dynamics is critical for constitutive androstane receptor activity. Structure, 19(1), 37–44.
[Bibtex]@article{wright2011helix, title={Helix 11 dynamics is critical for constitutive androstane receptor activity}, author={Wright, Edward and Busby, Scott A and Wisecarver, Sarah and Vincent, Jeremy and Griffin, Patrick R and Fernandez, Elias J}, journal={Structure}, volume={19}, number={1}, pages={37--44}, year={2011}, publisher={Elsevier} } - Cortines, J. R., Monroe, E. B., Kang, S., & Prevelige Jr, P. E.. (2011). A retroviral chimeric capsid protein reveals the role of the n-terminal $\beta$-hairpin in mature core assembly. Journal of molecular biology, 410(4), 641–652.
[Bibtex]@article{cortines2011retroviral, title={A retroviral chimeric capsid protein reveals the role of the N-terminal $\beta$-hairpin in mature core assembly}, author={Cortines, Juliana R and Monroe, Eric B and Kang, Sebyung and Prevelige Jr, Peter E}, journal={Journal of molecular biology}, volume={410}, number={4}, pages={641--652}, year={2011}, publisher={Elsevier} } - Kreshuk, A., Stankiewicz, M., Lou, X., Kirchner, M., Hamprecht, F. A., & Mayer, M. P.. (2011). Automated detection and analysis of bimodal isotope peak distributions in h/d exchange mass spectrometry using hexicon. International journal of mass spectrometry, 302(1-3), 125–131.
[Bibtex]@article{kreshuk2011automated, title={Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon}, author={Kreshuk, Anna and Stankiewicz, Marta and Lou, Xinghua and Kirchner, Marc and Hamprecht, Fred A and Mayer, Matthias P}, journal={International journal of mass spectrometry}, volume={302}, number={1-3}, pages={125--131}, year={2011}, publisher={Elsevier} } - Liu, S., Liu, L., Uzuner, U., Zhou, X., Gu, M., Shi, W., Zhang, Y., Dai, S. Y., & Yuan, J. S.. (2011). Hdx-analyzer: a novel package for statistical analysis of protein structure dynamics. Bmc bioinformatics, 12(1), S43.
[Bibtex]@article{liu2011hdx, title={HDX-analyzer: a novel package for statistical analysis of protein structure dynamics}, author={Liu, Sanmin and Liu, Lantao and Uzuner, Ugur and Zhou, Xin and Gu, Manxi and Shi, Weibing and Zhang, Yixiang and Dai, Susie Y and Yuan, Joshua S}, journal={BMC bioinformatics}, volume={12}, number={1}, pages={S43}, year={2011}, publisher={BioMed Central} } - Chalmers, M. J., Pascal, B. D., Willis, S., Zhang, J., Iturria, S. J., Dodge, J. A., & Griffin, P. R.. (2011). Methods for the analysis of high precision differential hydrogen–deuterium exchange data. International journal of mass spectrometry, 302(1-3), 59–68.
[Bibtex]@article{chalmers2011methods, title={Methods for the analysis of high precision differential hydrogen--deuterium exchange data}, author={Chalmers, Michael J and Pascal, Bruce D and Willis, Scooter and Zhang, Jun and Iturria, Stephen J and Dodge, Jeffery A and Griffin, Patrick R}, journal={International journal of mass spectrometry}, volume={302}, number={1-3}, pages={59--68}, year={2011}, publisher={Elsevier} } - Bou-Assaf, G. M.. (2011). Solution-phase hydrogen/deuterium exchange monitored by fourier transform ion cyclotron resonance mass spectrometry: technique development and application to muscle biochemistry The Florida State University.
[Bibtex]@book{bou2011solution, title={Solution-phase hydrogen/deuterium exchange monitored by Fourier transform ion cyclotron resonance mass spectrometry: Technique development and application to muscle biochemistry}, author={Bou-Assaf, George Michel}, year={2011}, publisher={The Florida State University} } - Kavan, D., & Man, P.. (2011). Mstools—web based application for visualization and presentation of hxms data. International journal of mass spectrometry, 302(1-3), 53–58.
[Bibtex]@article{kavan2011mstools, title={MSTools—Web based application for visualization and presentation of HXMS data}, author={Kavan, Daniel and Man, Petr}, journal={International journal of mass spectrometry}, volume={302}, number={1-3}, pages={53--58}, year={2011}, publisher={Elsevier} } - Houde, D., Berkowitz, S. A., & Engen, J. R.. (2011). The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies. Journal of pharmaceutical sciences, 100(6), 2071–2086.
[Bibtex]@article{houde2011utility, title={The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies}, author={Houde, Damian and Berkowitz, Steven A and Engen, John R}, journal={Journal of pharmaceutical sciences}, volume={100}, number={6}, pages={2071--2086}, year={2011}, publisher={Elsevier} } - Solt, L. A., Kumar, N., Nuhant, P., Wang, Y., Lauer, J. L., Liu, J., Istrate, M. A., Kamenecka, T. M., Roush, W. R., Vidović, D., & others. (2011). Suppression of t h 17 differentiation and autoimmunity by a synthetic ror ligand. Nature, 472(7344), 491.
[Bibtex]@article{solt2011suppression, title={Suppression of T H 17 differentiation and autoimmunity by a synthetic ROR ligand}, author={Solt, Laura A and Kumar, Naresh and Nuhant, Philippe and Wang, Yongjun and Lauer, Janelle L and Liu, Jin and Istrate, Monica A and Kamenecka, Theodore M and Roush, William R and Vidovi{\'c}, Du{\v{s}}ica and others}, journal={Nature}, volume={472}, number={7344}, pages={491}, year={2011}, publisher={Nature Publishing Group} } - Ng, L., Soon, F., Zhou, E. X., West, G. M., Kovach, A., Suino-Powell, K. M., Chalmers, M. J., Li, J., Yong, E., Zhu, J., & others. (2011). Structural basis for basal activity and autoactivation of abscisic acid (aba) signaling snrk2 kinases. Proceedings of the national academy of sciences, 108(52), 21259–21264.
[Bibtex]@article{ng2011structural, title={Structural basis for basal activity and autoactivation of abscisic acid (ABA) signaling SnRK2 kinases}, author={Ng, Ley-Moy and Soon, Fen-Fen and Zhou, X Edward and West, Graham M and Kovach, Amanda and Suino-Powell, Kelly M and Chalmers, Michael J and Li, Jun and Yong, Eu-Leong and Zhu, Jian-Kang and others}, journal={Proceedings of the National Academy of Sciences}, volume={108}, number={52}, pages={21259--21264}, year={2011}, publisher={National Acad Sciences} } - Zhang, J., Chalmers, M. J., Stayrook, K. R., Burris, L. L., Wang, Y., Busby, S. A., Pascal, B. D., Garcia-Ordonez, R. D., Bruning, J. B., Istrate, M. A., & others. (2011). Dna binding alters coactivator interaction surfaces of the intact vdr–rxr complex. Nature structural and molecular biology, 18(5), 556.
[Bibtex]@article{zhang2011dna, title={DNA binding alters coactivator interaction surfaces of the intact VDR--RXR complex}, author={Zhang, Jun and Chalmers, Michael J and Stayrook, Keith R and Burris, Lorri L and Wang, Yongjun and Busby, Scott A and Pascal, Bruce D and Garcia-Ordonez, Ruben D and Bruning, John B and Istrate, Monica A and others}, journal={Nature Structural and Molecular Biology}, volume={18}, number={5}, pages={556}, year={2011}, publisher={Nature Publishing Group} } - Chalmers, M. J., Busby, S. A., Pascal, B. D., West, G. M., & Griffin, P. R.. (2011). Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions. Expert review of proteomics, 8(1), 43–59.
[Bibtex]@article{chalmers2011differential, title={Differential hydrogen/deuterium exchange mass spectrometry analysis of protein--ligand interactions}, author={Chalmers, Michael J and Busby, Scott A and Pascal, Bruce D and West, Graham M and Griffin, Patrick R}, journal={Expert review of proteomics}, volume={8}, number={1}, pages={43--59}, year={2011}, publisher={Taylor \& Francis} } - West, G. M., Chien, E. Y., Katritch, V., Gatchalian, J., Chalmers, M. J., Stevens, R. C., & Griffin, P. R.. (2011). Ligand-dependent perturbation of the conformational ensemble for the gpcr $\beta$2 adrenergic receptor revealed by hdx. Structure, 19(10), 1424–1432.
[Bibtex]@article{west2011ligand, title={Ligand-dependent perturbation of the conformational ensemble for the GPCR $\beta$2 adrenergic receptor revealed by HDX}, author={West, Graham M and Chien, Ellen YT and Katritch, Vsevolod and Gatchalian, Jovylyn and Chalmers, Michael J and Stevens, Raymond C and Griffin, Patrick R}, journal={Structure}, volume={19}, number={10}, pages={1424--1432}, year={2011}, publisher={Elsevier} } - Wang, Y., Kumar, N., Solt, L. A., Richardson, T. I., Helvering, L. M., Crumbley, C., Garcia-Ordonez, R. D., Stayrook, K. R., Zhang, X., Novick, S., & others. (2010). Modulation of retinoic acid receptor-related orphan receptor $\alpha$ and $\gamma$ activity by 7-oxygenated sterol ligands. Journal of biological chemistry, 285(7), 5013–5025.
[Bibtex]@article{wang2010modulation, title={Modulation of retinoic acid receptor-related orphan receptor $\alpha$ and $\gamma$ activity by 7-oxygenated sterol ligands}, author={Wang, Yongjun and Kumar, Naresh and Solt, Laura A and Richardson, Timothy I and Helvering, Leah M and Crumbley, Christine and Garcia-Ordonez, Ruben D and Stayrook, Keith R and Zhang, Xi and Novick, Scott and others}, journal={Journal of Biological Chemistry}, volume={285}, number={7}, pages={5013--5025}, year={2010}, publisher={ASBMB} } - Marcsisin, S. R., & Engen, J. R.. (2010). Hydrogen exchange mass spectrometry: what is it and what can it tell us?. Analytical and bioanalytical chemistry, 397(3), 967–972.
[Bibtex]@article{marcsisin2010hydrogen, title={Hydrogen exchange mass spectrometry: what is it and what can it tell us?}, author={Marcsisin, Sean R and Engen, John R}, journal={Analytical and bioanalytical chemistry}, volume={397}, number={3}, pages={967--972}, year={2010}, publisher={Springer} } - Zhang, X., Chien, E. Y., Chalmers, M. J., Pascal, B. D., Gatchalian, J., Stevens, R. C., & Griffin, P. R.. (2010). Dynamics of the β2-adrenergic g-protein coupled receptor revealed by hydrogen- deuterium exchange. Analytical chemistry, 82(3), 1100–1108.
[Bibtex]@article{zhang2010dynamics, title={Dynamics of the β2-Adrenergic G-protein coupled receptor revealed by hydrogen- deuterium exchange}, author={Zhang, Xi and Chien, Ellen YT and Chalmers, Michael J and Pascal, Bruce D and Gatchalian, Jovylyn and Stevens, Raymond C and Griffin, Patrick R}, journal={Analytical chemistry}, volume={82}, number={3}, pages={1100--1108}, year={2010}, publisher={ACS Publications} } - Zhang, J., Chalmers, M. J., Stayrook, K. R., Burris, L. L., Garcia-Ordonez, R. D., Pascal, B. D., Burris, T. P., Dodge, J. A., & Griffin, P. R.. (2010). Hydrogen/deuterium exchange reveals distinct agonist/partial agonist receptor dynamics within vitamin d receptor/retinoid x receptor heterodimer. Structure, 18(10), 1332–1341.
[Bibtex]@article{zhang2010hydrogen, title={Hydrogen/deuterium exchange reveals distinct agonist/partial agonist receptor dynamics within vitamin D receptor/retinoid X receptor heterodimer}, author={Zhang, Jun and Chalmers, Michael J and Stayrook, Keith R and Burris, Lorri L and Garcia-Ordonez, Ruben D and Pascal, Bruce D and Burris, Thomas P and Dodge, Jeffery A and Griffin, Patrick R}, journal={Structure}, volume={18}, number={10}, pages={1332--1341}, year={2010}, publisher={Elsevier} } - Lou, X., Kirchner, M., Renard, B. Y., Köthe, U., Boppel, S., Graf, C., Lee, C., Steen, J. A., Steen, H., Mayer, M. P., & others. (2010). Deuteration distribution estimation with improved sequence coverage for hx/ms experiments. Bioinformatics, 26(12), 1535–1541.
[Bibtex]@article{lou2010deuteration, title={Deuteration distribution estimation with improved sequence coverage for HX/MS experiments}, author={Lou, Xinghua and Kirchner, Marc and Renard, Bernhard Y and K{\"o}the, Ullrich and Boppel, Sebastian and Graf, Christian and Lee, Chung-Tien and Steen, Judith AJ and Steen, Hanno and Mayer, Matthias P and others}, journal={Bioinformatics}, volume={26}, number={12}, pages={1535--1541}, year={2010}, publisher={Oxford University Press} } - Sours, K. M., & Ahn, N. G.. (2010). Analysis of map kinases by hydrogen exchange mass spectrometry. In Map kinase signaling protocols (pp. 239–255). Springer.
[Bibtex]@incollection{sours2010analysis, title={Analysis of MAP kinases by hydrogen exchange mass spectrometry}, author={Sours, Kevin M and Ahn, Natalie G}, booktitle={MAP Kinase Signaling Protocols}, pages={239--255}, year={2010}, publisher={Springer} } - Gershon, P.. (2010). Two tools for applying chromatographic retention data to the mass-based identification of peptides during hydrogen/deuterium exchange experiments by nano-liquid chromatography/matrix-assisted laser desorption/ionization mass spectrometry. Rapid communications in mass spectrometry, 24(23), 3373–3379.
[Bibtex]@article{gershon2010two, title={Two tools for applying chromatographic retention data to the mass-based identification of peptides during hydrogen/deuterium exchange experiments by nano-liquid chromatography/matrix-assisted laser desorption/ionization mass spectrometry}, author={Gershon, PD}, journal={Rapid Communications in Mass Spectrometry}, volume={24}, number={23}, pages={3373--3379}, year={2010}, publisher={Wiley Online Library} } - Tao, X. J. P., Yaosheng, L., & Chengde, C.. (2009). Research of data visualization in near-infrared spectroscopy. Paper presented at the 2009 international workshop on information security and application (iwisa 2009).
[Bibtex]@inproceedings{tao2009research, title={Research of Data Visualization in Near-Infrared Spectroscopy}, author={Tao, Xie Jun Pan and Yaosheng, Lu and Chengde, Chen}, booktitle={2009 International Workshop on Information Security and Application (IWISA 2009)}, pages={473}, year={2009}, organization={Citeseer} } - Percy, A. J., Slysz, G. W., & Schriemer, D. C.. (2009). Surrogate h/d detection strategy for protein conformational analysis using ms/ms data. Analytical chemistry, 81(19), 7900–7907.
[Bibtex]@article{percy2009surrogate, title={Surrogate H/D detection strategy for protein conformational analysis using MS/MS data}, author={Percy, Andrew J and Slysz, Gordon W and Schriemer, David C}, journal={Analytical chemistry}, volume={81}, number={19}, pages={7900--7907}, year={2009}, publisher={ACS Publications} } - Kaur, P., Kiselar, J. G., & Chance, M. R.. (2009). Integrated algorithms for high-throughput examination of covalently labeled biomolecules by structural mass spectrometry. Analytical chemistry, 81(19), 8141–8149.
[Bibtex]@article{kaur2009integrated, title={Integrated algorithms for high-throughput examination of covalently labeled biomolecules by structural mass spectrometry}, author={Kaur, Parminder and Kiselar, Janna G and Chance, Mark R}, journal={Analytical chemistry}, volume={81}, number={19}, pages={8141--8149}, year={2009}, publisher={ACS Publications} } - Kaur, P., Kiselar, J. G., & Chance, M. R.. (2009). Integrated algorithms for high-throughput examination of covalently labeled biomolecules by structural mass spectrometry. Analytical chemistry, 81(19), 8141–8149.
[Bibtex]@article{kaur2009integrated, title={Integrated algorithms for high-throughput examination of covalently labeled biomolecules by structural mass spectrometry}, author={Kaur, Parminder and Kiselar, Janna G and Chance, Mark R}, journal={Analytical chemistry}, volume={81}, number={19}, pages={8141--8149}, year={2009}, publisher={ACS Publications} } - Avvaru, B. S., Busby, S. A., Chalmers, M. J., Griffin, P. R., Venkatakrishnan, B., Agbandje-McKenna, M., Silverman, D. N., & McKenna, R.. (2009). Apo-human carbonic anhydrase ii revisited: implications of the loss of a metal in protein structure, stability, and solvent network. Biochemistry, 48(31), 7365–7372.
[Bibtex]@article{avvaru2009apo, title={Apo-human carbonic anhydrase II revisited: implications of the loss of a metal in protein structure, stability, and solvent network}, author={Avvaru, Balendu Sankara and Busby, Scott A and Chalmers, Michael J and Griffin, Patrick R and Venkatakrishnan, Balasubramanian and Agbandje-McKenna, Mavis and Silverman, David N and McKenna, Robert}, journal={Biochemistry}, volume={48}, number={31}, pages={7365--7372}, year={2009}, publisher={ACS Publications} } - Pascal, B. D., Chalmers, M. J., Busby, S. A., & Griffin, P. R.. (2009). Hd desktop: an integrated platform for the analysis and visualization of h/d exchange data. Journal of the american society for mass spectrometry, 20(4), 601–610.
[Bibtex]@article{pascal2009hd, title={HD desktop: an integrated platform for the analysis and visualization of H/D exchange data}, author={Pascal, Bruce D and Chalmers, Michael J and Busby, Scott A and Griffin, Patrick R}, journal={Journal of the American Society for Mass Spectrometry}, volume={20}, number={4}, pages={601--610}, year={2009}, publisher={Elsevier} } - Slysz, G. W., Baker, C. A., Bozsa, B. M., Dang, A., Percy, A. J., Bennett, M., & Schriemer, D. C.. (2009). Hydra: software for tailored processing of h/d exchange data from ms or tandem ms analyses. Bmc bioinformatics, 10(1), 162.
[Bibtex]@article{slysz2009hydra, title={Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses}, author={Slysz, Gordon W and Baker, Charles AH and Bozsa, Benjamin M and Dang, Anthony and Percy, Andrew J and Bennett, Melissa and Schriemer, David C}, journal={Bmc Bioinformatics}, volume={10}, number={1}, pages={162}, year={2009}, publisher={BioMed Central} } - Engen, J. R.. (2009). Analysis of protein conformation and dynamics by hydrogen/deuterium exchange ms. ACS Publications.
[Bibtex]@misc{engen2009analysis, title={Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS}, author={Engen, John R}, year={2009}, publisher={ACS Publications} } - Shonsey, E. M.. (2008). Structural and functional studies of human bile acid coa: amino acid n-acyltransferase (hbat) The University of Alabama at Birmingham.
[Bibtex]@book{shonsey2008structural, title={Structural and functional studies of human bile acid CoA: amino acid N-acyltransferase (HBAT)}, author={Shonsey, Erin Mary}, year={2008}, publisher={The University of Alabama at Birmingham} } - Suchanova, B., & Tuma, R.. (2008). Folding and assembly of large macromolecular complexes monitored by hydrogen-deuterium exchange and mass spectrometry. Microbial cell factories, 7(1), 12.
[Bibtex]@article{suchanova2008folding, title={Folding and assembly of large macromolecular complexes monitored by hydrogen-deuterium exchange and mass spectrometry}, author={Suchanova, Bohumila and Tuma, Roman}, journal={Microbial cell factories}, volume={7}, number={1}, pages={12}, year={2008}, publisher={BioMed Central} } - Rutkowska-Wlodarczyk, I., Stepinski, J., Dadlez, M., Darzynkiewicz, E., Stolarski, R., & Niedzwiecka, A.. (2008). Structural changes of eif4e upon binding to the mrna 5′ monomethylguanosine and trimethylguanosine cap. Biochemistry, 47(9), 2710–2720.
[Bibtex]@article{rutkowska2008structural, title={Structural changes of eIF4E upon binding to the mRNA 5′ monomethylguanosine and trimethylguanosine Cap}, author={Rutkowska-Wlodarczyk, Izabela and Stepinski, Janusz and Dadlez, Michal and Darzynkiewicz, Edward and Stolarski, Ryszard and Niedzwiecka, Anna}, journal={Biochemistry}, volume={47}, number={9}, pages={2710--2720}, year={2008}, publisher={ACS Publications} } - Nikamanon, P., Pun, E., Chou, W., Koter, M. D., & Gershon, P. D.. (2008). ” tof2h”: a precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an lc-maldi approach, covering the data pipeline from spectral acquisition to hdx rate analysis. Bmc bioinformatics, 9(1), 387.
[Bibtex]@article{nikamanon2008tof2h, title={" TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis}, author={Nikamanon, Pornpat and Pun, Elroy and Chou, Wayne and Koter, Marek D and Gershon, Paul D}, journal={Bmc Bioinformatics}, volume={9}, number={1}, pages={387}, year={2008}, publisher={BioMed Central} } - Slysz, G. W., Percy, A. J., & Schriemer, D. C.. (2008). Restraining expansion of the peak envelope in h/d exchange-ms and its application in detecting perturbations of protein structure/dynamics. Analytical chemistry, 80(18), 7004–7011.
[Bibtex]@article{slysz2008restraining, title={Restraining expansion of the peak envelope in H/D exchange-MS and its application in detecting perturbations of protein structure/dynamics}, author={Slysz, Gordon W and Percy, Andrew J and Schriemer, David C}, journal={Analytical Chemistry}, volume={80}, number={18}, pages={7004--7011}, year={2008}, publisher={ACS Publications} } - Sperling, E., Bunner, A. E., Sykes, M. T., & Williamson, J. R.. (2008). Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares fourier transform convolution. Analytical chemistry, 80(13), 4906–4917.
[Bibtex]@article{sperling2008quantitative, title={Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution}, author={Sperling, Edit and Bunner, Anne E and Sykes, Michael T and Williamson, James R}, journal={Analytical chemistry}, volume={80}, number={13}, pages={4906--4917}, year={2008}, publisher={ACS Publications} } - Iacob, R. E., Murphy, J. P., & Engen, J. R.. (2008). Ion mobility adds an additional dimension to mass spectrometric analysis of solution-phase hydrogen/deuterium exchange. Rapid communications in mass spectrometry, 22(18), 2898–2904.
[Bibtex]@article{iacob2008ion, title={Ion mobility adds an additional dimension to mass spectrometric analysis of solution-phase hydrogen/deuterium exchange}, author={Iacob, Roxana E and Murphy, James P and Engen, John R}, journal={Rapid Communications in Mass Spectrometry}, volume={22}, number={18}, pages={2898--2904}, year={2008}, publisher={Wiley Online Library} } - Bruning, J. B., Chalmers, M. J., Prasad, S., Busby, S. A., Kamenecka, T. M., He, Y., Nettles, K. W., & Griffin, P. R.. (2007). Partial agonists activate ppar$\gamma$ using a helix 12 independent mechanism. Structure, 15(10), 1258–1271.
[Bibtex]@article{bruning2007partial, title={Partial agonists activate PPAR$\gamma$ using a helix 12 independent mechanism}, author={Bruning, John B and Chalmers, Michael J and Prasad, Swati and Busby, Scott A and Kamenecka, Theodore M and He, Yuanjun and Nettles, Kendall W and Griffin, Patrick R}, journal={Structure}, volume={15}, number={10}, pages={1258--1271}, year={2007}, publisher={Elsevier} } - Chalmers, M. J., Busby, S. A., Pascal, B. D., Southern, M. R., & Griffin, P. R.. (2007). A two-stage differential hydrogen deuterium exchange method for the rapid characterization of protein/ligand interactions. Journal of biomolecular techniques: jbt, 18(4), 194.
[Bibtex]@article{chalmers2007two, title={A two-stage differential hydrogen deuterium exchange method for the rapid characterization of protein/ligand interactions}, author={Chalmers, Michael J and Busby, Scott A and Pascal, Bruce D and Southern, Mark R and Griffin, Patrick R}, journal={Journal of biomolecular techniques: JBT}, volume={18}, number={4}, pages={194}, year={2007}, publisher={The Association of Biomolecular Resource Facilities} } - Slysz, G. W.. (2007). Development and evaluation of new tools for mass spectrometry-based protein analysis. .
[Bibtex]@article{slysz2007development, title={Development and evaluation of new tools for mass spectrometry-based protein analysis}, author={Slysz, Gordon W}, year={2007}, publisher={University of Calgary} } - Pascal, B., Chalmers, M., Busby, S., Mader, C., Southern, M. R., Tsinoremas, N., & Griffin, P. R.. (2007). The deuterator: software for the determination of backbone amide deuterium levels from h/d exchange ms data. Bmc bioinformatics, 8(1), 156.
[Bibtex]@article{pascal2007deuterator, title={The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data}, author={Pascal, BD and Chalmers, MJ and Busby, SA and Mader, CC and Southern, Mark R and Tsinoremas, NF and Griffin, Patrick R}, journal={BMC bioinformatics}, volume={8}, number={1}, pages={156}, year={2007}, publisher={BioMed Central} } - Coufalova, D., Michalova, E., Vojtesek, B., & Hernychova, L.. Hydrogen/deuterium exchange mass spectrometry and its utilization. Hydrogen/deuterium exchange mass spectrometry and its utilization, 146.
[Bibtex]@article{coufalovahydrogen, title={HYDROGEN/DEUTERIUM EXCHANGE MASS SPECTROMETRY AND ITS UTILIZATION}, author={Coufalova, Dominika and Michalova, Eva and Vojtesek, Borivoj and Hernychova, Lenka}, journal={HYDROGEN/DEUTERIUM EXCHANGE MASS SPECTROMETRY AND ITS UTILIZATION}, pages={146} } - Coufalová, D., Michalová, E., Vojtěšek, B., & Hernychová, L.. Hydrogen/deuterium exchange mass spectrometry and its utilization review article. .
[Bibtex]@article{coufalovahydrogen, title={HYDROGEN/DEUTERIUM EXCHANGE MASS SPECTROMETRY AND ITS UTILIZATION Review article}, author={Coufalov{\'a}, Dominika and Michalov{\'a}, Eva and Vojt{\v{e}}{\v{s}}ek, Bo{\v{r}}ivoj and Hernychov{\'a}, Lenka} } - Lou, E. X. M.. Vorgelegt von m. eng xinghua lou aus zhuji, zhejiang, china. .
[Bibtex]@article{louvorgelegt, title={vorgelegt von M. Eng Xinghua Lou aus Zhuji, Zhejiang, China}, author={Lou, M Eng Xinghua} } - Zhang, Z., & Fang, J.. Process and product development, amgen inc. thousand oaks, california. .
[Bibtex]@article{zhangprocess, title={Process and Product Development, Amgen Inc. Thousand Oaks, California}, author={Zhang, Zhongqi and Fang, Jing} }